Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq286 120 2e-22 seq2618 118 7e-22 >seq286 Length=933739 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || || |||||| | |||||||| | | Sbjct 781540 ATGCAGATTTTTGTCAAGACTTTGACTGGCAAGACAATCACTTTAGAAGTTGAACCATCA 781599 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | ||||| ||||| |||||| | || || ||||| Sbjct 781600 GACACCATTGAGAATGTGAAGGC-TAAAATCCAAGACAAGGAAGGTATCCCTCCTGATCA 781658 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || ||| |||| || | ||| ||| || ||||| || Sbjct 781659 GCAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGACGTACTCTATCAGATTATAA 781718 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| ||| | |||||||| ||| | || ||||||| Sbjct 781719 TATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGG 781766 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||| | ||||| || | || Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| |||||||||||| | || ||||| || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || |||||||||||||| | |||||| | ||||||||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | |||||||| Sbjct 379632 ATCCAGAAGGAATCCACTCTCCATTTAGT 379660 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 |||| ||||||||||| || ||||| || ||||| ||||| || || | || ||||| Sbjct 377395 TTAAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAAC 377454 Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | | |||||| | |||| ||||| |||||| || ||||| ||| | || || | Sbjct 377455 CGTCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCCCG 377514 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | || || | | || |||||||| || ||| ||||||| | | | || | ||||| Sbjct 377515 ACCAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATT 377574 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 | ||||| ||||| || || || | || |||||||| Sbjct 377575 ATAACATTCAAAAGGAATCTACCCTTCACTTAGTTTT 377611 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||| | ||||| || | || Sbjct 379908 ATGCAAATCTTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379967 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| |||||||||||| | || ||||| || Sbjct 379968 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 380027 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || |||||||| ||||| | |||||| | || |||||| Sbjct 380028 CAGCGTCTGATCTTTGCTGGTAAACAACTAGAAGATGGTCGCACTCTTTCAGACTACAAC 380087 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || ||||| || || Sbjct 380088 ATCCAGAAGGAGTCTACTTTACACTTGGT 380116 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || || || |||||| | ||||| || | | Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| || || || ||||| | || ||||| || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAA-TTCAAGATAAGGAAGGCATTCCCCCAGACCA 782114 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || ||||| || ||||| | ||||| ||| || ||||| Sbjct 782115 GCAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTATCTGACTACAA 782174 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||||||| || | ||||| || || || ||| | ||||| Sbjct 782175 TATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGG 782222 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||| | |||||||| | || Sbjct 378540 ATGCAAATATTTGTAAAGACATTGACAGGGAAGACCATCACTTTGGAAGTTGAACCTTCG 378599 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || |||||||||||| | || ||||| || Sbjct 378600 GACACAATTGAGAATGTCAAGGCCAAGA-TTCAAGACAAAGAAGGTATTCCTCCAGACCA 378658 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || |||||||||||||| | |||||| | || ||||| Sbjct 378659 GCAGCGTCTGATTTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCGGACTACAA 378718 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | |||||||| Sbjct 378719 TATCCAGAAGGAATCCACTCTCCATTTAGT 378748 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || || || ||||| | |||||||| | | Sbjct 781084 ATGCAGATCTTTGTTAAGACTTTAACTGGCAAGACAATCACATTGGAAGTTGAACCATCA 781143 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || ||||| || || ||||| | || ||||| || Sbjct 781144 GACACTATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAG 781203 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || ||||| | ||||||| | ||||| || Sbjct 781204 CAGAGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGCACTCTTTCTGATTATAAT 781263 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || |||||||||||||| | | ||| |||| || Sbjct 781264 ATCCAAAAGGAATCTACATTACATTTAGTACTGCGTTTGAGAGGTGG 781310 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| || |||||| | || || || || | Sbjct 378084 ATGCAAATCTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCT 378143 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| |||||||||||| | || |||||||| Sbjct 378144 GACACAATTGAGAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 378203 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || |||||||||||||| | |||||| | || ||||| Sbjct 378204 CAGCGTCTGATCTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCAGACTACAAT 378263 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | |||||||| Sbjct 378264 ATTCAGAAGGAATCCACTCTCCATTTAGT 378292 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| || |||||||| || || || | || Sbjct 379224 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 379283 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| |||||||| || | || ||||| || Sbjct 379284 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 379343 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || |||||||||||||| | |||||| | ||| ||||| Sbjct 379344 CAGCGTCTGATCTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 379403 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | |||||||| Sbjct 379404 ATCCAGAAGGAATCCACTCTCCATTTAGT 379432 >seq2618 Length=201275 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || ||||| || || || || | Sbjct 161859 AAAATGCAGATCTTCGTAAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTGGAGGCT 161800 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | |||| | || ||||| ||||| ||||| | || ||||| Sbjct 161799 TCCGACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAGGAAGGAATTCCTCCAGAC 161740 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || || || || |||||| |||| || | || ||| | ||| ||| Sbjct 161739 CAACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGCCGTACTCTTTCCGACTAC 161680 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||||| | || | ||| | ||| | || ||||| Sbjct 161679 AACATCCAGAAGGAATCCACTCTTCACCTGGTTCTCAGGCTTCGTGGAGG 161630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995247689872