Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2618 167 6e-36 seq286 159 8e-34 seq1176 127 5e-24 seq1077 122 2e-22 seq3141 86.0 1e-11 >seq2618 Length=201275 Score = 167 bits (184), Expect = 6e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| || || || ||||| ||||||||||| || |||| ||||| |||| | ||| Sbjct 161635 ACGAAGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 161694 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | || || ||||||||||| | || |||||||| || ||||| || Sbjct 161695 ACGGCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCC 161754 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||||||| |||||| ||||| || | ||||| || | Sbjct 161755 TTCCTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAG 161814 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | ||||||| ||| | |||||||| Sbjct 161815 GGTGATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 >seq286 Length=933739 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || ||||| || |||||||| | |||||| || | || || | || Sbjct 782211 TCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGTGCGACC 782152 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||||||| || || || || || | || ||| ||||| || ||||| |||||||| Sbjct 782151 ATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTT 782092 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||||||| || ||||||||||| | |||||| ||||| ||||| Sbjct 782091 ATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAAAGTGAT 782032 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || || ||||| | ||| | |||||| Sbjct 782031 AGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||||||| | | || | ||||||||| | ||||| ||| Sbjct 781052 GTAGATTCCTTTTGGATATTGTAATCAGAGAGTGTACGCCCATCTTCCAATTGCTTTCCA 780993 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||| Sbjct 780992 GCAAAGATAAGTCGCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTAGCCTTT 780933 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| ||||| || || | ||| || |||| ||| || || ||||| ||||| ||| Sbjct 780932 ACATTTTCAATGGTATCCGATGGTTCTACTTCTAGCGTTATTGTTTTGCCAGTCAATGTT 780873 Query 225697 TTTATGAACACTTGCATT 225714 || | || | |||||| Sbjct 780872 TTCACAAAGATCTGCATT 780855 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||||| || |||| |||||| || | | ||| | |||||| Sbjct 378751 AGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGACCATCT 378692 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || || || || ||||| || ||||||||||| |||||| Sbjct 378691 TCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCT 378632 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || || ||||| || | ||| || || || ||||| ||| Sbjct 378631 TGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTGATGGTC 378572 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||| || | |||||| Sbjct 378571 TTCCCTGTCAATGTCTTTACAAATATTTGCAT 378540 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| |||| ||| ||||| | | ||| | ||||| || | ||| Sbjct 781742 TGCAGTGTCGACTCTTTCTGGATATTATAATCTGATAGAGTACGTCCATCCTCCAATTGC 781683 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || || || || || || |||||||||||||||||||| || Sbjct 781682 TTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTGTCTTGGATTTTA 781623 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || ||||||||||| | ||| || ||||| ||||| |||||||| ||| Sbjct 781622 GCCTTCACATTCTCAATGGTGTCTGATGGTTCAACTTCTAAAGTGATTGTCTTGCCAGTC 781563 Query 225691 AAAGTTTT 225698 ||||| || Sbjct 781562 AAAGTCTT 781555 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||||| || || | |||||| || | | ||| | |||||| Sbjct 378295 AGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAGAGAGTGCGACCATCT 378236 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| || || || || || || ||||||||||| |||||| Sbjct 378235 TCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCTTCTTTGTCT 378176 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || || ||||| |||| ||||| || || ||||| ||| Sbjct 378175 TGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACCTCCAAAGTGATGGTC 378116 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 378115 TTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| |||| ||| ||||| | | || | ||||| || | ||| Sbjct 781970 TGCAGTGTCGACTCTTTCTGGATATTATAATCTGATAGTGTACGGCCATCCTCCAATTGC 781911 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || || || || || || ||||||||||| |||||||| || Sbjct 781910 TTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTATCTTGGATTTTA 781851 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || ||||| ||||| | |||||| ||||| || || |||||||| || Sbjct 781850 GCCTTCACATTCTCAATGGTATCTGATGGTTCCACTTCTAAAGTAATAGTCTTGCCAGTT 781791 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | |||||| Sbjct 781790 AATGTTTTGACGAAAATTTGCAT 781768 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||||| || |||| ||||||||||| | ||| | |||||| Sbjct 379663 AGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAGAGAGTGCGACCATCT 379604 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| || || || ||||| || || |||||||| ||||| Sbjct 379603 TCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCC 379544 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || || || ||||| || | ||| || || || ||||| ||| Sbjct 379543 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTC 379484 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 379483 TTCCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 379435 AGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCT 379376 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| || || || ||||| || || || || || ||||| Sbjct 379375 TCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCC 379316 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || || || ||||| || | ||||| || | ||||| ||| Sbjct 379315 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTC 379256 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 379255 TTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| | ||| || || || |||| ||||| || | | ||| | |||||| Sbjct 380119 AGTACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCT 380060 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| || || ||||| ||||| || || || ||||| || || |||||||| ||||| Sbjct 380059 TCTAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCC 380000 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || || || ||||| || | ||| || || || ||||| ||| Sbjct 379999 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTC 379940 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 379939 TTCCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 >seq1176 Length=404280 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || ||||| || |||||||| | |||||| || | || || | || Sbjct 385190 TCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGTGCGACC 385131 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||||||| || || || || || | || ||| ||||| | ||||| |||||||| Sbjct 385130 ATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTAGGGGAATGCCTTCCTT 385071 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||||||| || ||||||||||| | |||||| ||||| ||||| Sbjct 385070 ATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAAAGTGAT 385011 >seq1077 Length=13575 Score = 122 bits (134), Expect = 2e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||| | || || ||||| ||| |||| ||||||||| | ||||| Sbjct 1642 CCAAATTTATAATACTATTGTCACAGCTCATGCTTTTATTATAATTTTCTTTATAGTTAT 1701 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || ||||||||||| |||| | || | || |||||||| Sbjct 1702 ACCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCCCTTATACTAGGAGCTCCTGA 1761 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 ||| |||||||| | | || |||||||| ||||||||| |||| || || ||| Sbjct 1762 TATAGCTTTTCCTCGTATAAATAATATAAGATTTTGATTATTACCCCCATCTTTA 1816 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||| || || | |||||| | | || ||||||| || || |||||||| Sbjct 2037 AATGGTATTTGATCAAATGATAAATTATTAATTCGTATATTAATAATAGTTGTAATAAAA 1978 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || ||||| || || |||||||||||| ||| ||||||||||| Sbjct 1977 TTAATAGCTCCTAAAATTGAAGAAATTCCAGCAAGATGTAAAGAAAAAATTGCTAAATCT 1918 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || ||| | || ||||| | | ||||| ||| || || ||||||||||| || || Sbjct 1917 ACTGAAGCTCCTTGATGAGCAATATTAGAAGATAAAGGGGGATAAACTGTTCATCCAGT 1859 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | |||||||| || || |||| Sbjct 2215 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCTCCCCCACCTGC 2156 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| |||||| || |||| |||||||| Sbjct 2155 TGGATCAAAAAATGAAGTATTTAAGTTTCGGTCAGTTAA 2117 >seq3141 Length=14221 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 |||| ||||||||| | || ||| ||| |||||||||| ||||| || || |||||| Sbjct 13730 AATGCTAATTTATGTAATCTTATACCTGGTGCTCTCATATTTAATATTGTTGTTATAAAG 13789 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || || || | | | |||||||| | ||||||| |||||||||||||| Sbjct 13790 TTCATGGCTCCAAGTAAACTACTTATACCTGATAAATGTAAAGCGAATATTGCTAAATCA 13849 Query 371485 AC 371486 || Sbjct 13850 AC 13851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192477966897896