Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3433 203 3e-47 seq286 91.5 1e-13 seq170 84.2 2e-11 >seq3433 Length=253125 Score = 203 bits (224), Expect = 3e-47 Identities = 578/885 (65%), Gaps = 19/885 (2%) Strand=Plus/Plus Query 109136 TCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGC 109195 ||| ||||||||||||||||||||| |||||| || || | ||| || || || | Sbjct 145754 TCGGCGCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGATCGTGTCC 145813 Query 109196 CGTTGCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCA 109255 | | || |||||| | ||| |||| || || || || || || ||||| || || |||| Sbjct 145814 CCATTCCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGTGATGGCA 145873 Query 109256 TCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCG 109315 |||| ||| | || || || ||||| | || |||||||| || ||| | Sbjct 145874 TCAATGACAGTTTGAAGGAAATCGAAGGTAGTTTCCAAGCGTTGCAACGCTCATGCTCTG 145933 Query 109316 GTCGCGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAA 109375 | ||||| || || | ||||| || || || |||||||| |||| || || || | Sbjct 145934 GGCGCGAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAGCCACAGA 145993 Query 109376 AAGGCGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCA 109435 |||| | | | ||||| || || ||||||||||| || || |||||||||||| | Sbjct 145994 AAGGACTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATGGCGTTGA 146053 Query 109436 AATTGGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACC 109495 || || | ||| | | || ||||| || || || || || ||||| | | || | Sbjct 146054 AACAAGCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTCGCAGATC 146113 Query 109496 CGTTTTATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAAT 109555 | || | || | | || | | || ||| | ||||| | || | | || | Sbjct 146114 CTTTCTTCTTCTTCGATGACCCAGTTAAGAGACACCGTTTCGTCGCTTCAGCGAAGGAGT 146173 Query 109556 TTTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCA 109615 | | | | |||||| | |||||||| ||||||| || |||||||| || || |||| Sbjct 146174 TCCTTCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCCCCGGAGGCA 146233 Query 109616 AGGGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGT 109675 | || || || || |||||| | || ||| | |||| ||| | ||| Sbjct 146234 AAGGAGCTAACGAGAAACTCGGCAGC---CCGAAAGACGGTGAAACTTACGTCATATTGA 146290 Query 109676 TAAAAGAGTTGCGCGCCATGTTGGACGACT------TGCAAACGGCCACCAACAAAACGT 109729 | |||||| |||||| ||||| |||| | | ||||||| ||| ||| | Sbjct 146291 TGAAAGAGCTGCGCGAAATGTTAAACGAATTATCTCTTCAAACGG---GCAAGAAA---T 146344 Query 109730 ACGAATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGT 109789 ||||| | || || || || ||||| | || || ||| | || |||| ||| Sbjct 146345 ACGAACTCACATCAGCTATCAGTGCCGGCTGGGACAAGATTCAAGTAATCGACTACAAAG 146404 Query 109790 CGGCGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGT 109849 | || ||| | || ||||| | ||||| | |||| ||||| ||||| || || |||| Sbjct 146405 CTGCCCAAAACTACATGGACCACATATTCCTCATGAGTTACGACTTCAAGGGTGCCTGGT 146464 Query 109850 CAAACACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAAT 109909 | || ||||| |||| || | | || || || ||||||||| || ||| Sbjct 146465 CCAATGATACTTTAGGACATCAGACTTCATTATATGCACCTGAGTGGAATCCGAAGGAAA 146524 Query 109910 TGTACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTC--GCCTaaaaa 109967 |||||| || || | | || | | |||| | | || ||||| ||||| || Sbjct 146525 CGTACACAACTGACTTCGGTGTACAGTACTTGTT--AGCTCAAGGTGTCAACCCTAAGAA 146582 Query 109968 aaTTATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGT 110012 ||| || | ||||| || ||||| ||||| || ||||| || || Sbjct 146583 GATTGTAGTAGGCGTCGCTATGTATGGCCGTGGGTGGACCGGAGT 146627 >seq286 Length=933739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || | |||||| || |||| || | ||| || ||||||||||||||||| || | Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAG-- 782165 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| | | || |||||| | ||||| || ||| | || | ||||| |||||| || Sbjct 782164 ATAATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGG 782105 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT- 101188 | | |||||| || || |||||| ||||||| | | || |||| | ||| Sbjct 782104 GAATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATG--GTTC 782047 Query 101189 -GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || ||||| ||||| || |||||||| | ||||||||||| Sbjct 782046 CACTTCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 >seq170 Length=994537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 103374 GACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGC----GTTT 103429 || |||||| | ||||| ||||| || ||| ||| ||| ||||||||| | || Sbjct 674155 GATGTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTT 674214 Query 103430 CGCCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACT 103489 || |||| || || || ||| || |||||||||||||| | ||||||| |||| Sbjct 674215 CG----TGGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACT 674270 Query 103490 CGTGCACGTGAAAACCGTGC 103509 |||||||||| ||||| ||| Sbjct 674271 CGTGCACGTGGAAACCATGC 674290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409643405290356