Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq209 538 5e-148 seq995 104 3e-17 >seq209 Length=133430 Score = 538 bits (596), Expect = 5e-148 Identities = 1212/1801 (67%), Gaps = 39/1801 (2%) Strand=Plus/Minus Query 76759 ACTTT-ATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGT 76817 ||||| | |||| |||||| | ||| || ||||||| | || || |||||||| ||| Sbjct 15053 ACTTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGT 14994 Query 76818 AGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGT 76877 | ||||||||| || ||||| || |||| |||| | || || || || ||| | Sbjct 14993 AAATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAAC 14934 Query 76878 TTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCT 76937 || |||| |||| || || | |||||| || | || || ||||| || ||||| || Sbjct 14933 TTTCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCA 14874 Query 76938 CCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAA 76997 || |||||||| ||||||| || | ||||| | |||||||||| || || | Sbjct 14873 CCCCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATAC 14814 Query 76998 ACTTGTTTGATATCATCTGGAA--GGTT-TGTATTTTGAATGGAACCACCATCTGATATA 77054 | | | |||| || | || | | || | |||||||||| |||||| | ||| Sbjct 14813 AAATCTCTGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATT 14754 Query 77055 ATTGTATTCTTTATATCATCATTCCACAATT-TCCTCTCTGTTAAAACTCTAAGGAGATG 77113 || ||| || || || |||| ||| || | | || | ||| ||| | ||||| | || Sbjct 14753 ATAAGATTTTTCATGTCTTCATCCCATAAATCTGCT-TGTGTCAAATCCCTAAGCAAGTG 14695 Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGT 77170 |||| || | ||||||||||||||| ||||| ||| || ||||| || || Sbjct 14694 GTGATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGT 14638 Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 | ||||||| | |||||||| || || | |||||| |||||||| || || ||||| || Sbjct 14637 AAATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGG 14578 Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 77290 ||| | | ||| || | ||||||| || ||||| || || ||| ||| Sbjct 14577 TGCTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCA 14518 Query 77291 ATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGC 77350 ||||| | |||||| ||| |||||| | ||| ||||||| |||||| | ||| || Sbjct 14517 GTCCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGC 14458 Query 77351 ATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTC 77410 ||| | ||| || ||| ||| ||| | || || ||||||| || ||||| Sbjct 14457 TGGACTTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTC 14398 Query 77411 CAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG--TGCTTCAATA 77468 ||| || || || || |||||||| || || || || | | |||| |||| | Sbjct 14397 CAAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGT-TCAACTTGATAGCTTTCTCA 14340 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || ||| | ||| | | | | || ||||| || |||| || ||||||||||| || Sbjct 14339 CTTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCT 14280 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 || || ||||| || ||| || ||||||||||||||| || ||| | || | || Sbjct 14279 ATGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCA 14220 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || ||||| || |||||| | || ||| ||| || |||| || ||||| Sbjct 14219 ATTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTG 14160 Query 77649 AATCTTCCATCT---ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCT 77705 || || |||| ||||||||||||| | ||||| || || | |||||| ||||| Sbjct 14159 AAAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCA 14100 Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 || |||| | | || | || || || ||||| ||||| || ||||| || ||| Sbjct 14099 ACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTG 14040 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 || ||||||| ||| ||||| ||| ||||||| ||||||||||| | || |||| || Sbjct 14039 CCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTT 13980 Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA------T 77878 || || || | || | ||| | ||| | |||||| | | ||| ||||||| | Sbjct 13979 CCAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACA-TCTGCGCTTTTACTTGCTT 13921 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 | | | || | | ||| |||||||| ||||||| |||||| || ||||| Sbjct 13920 AACAAACTTTT------TTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCC 13867 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 |||| ||| | |||||||| |||| || ||||| | ||| | | | || Sbjct 13866 CCAACAATCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTT 13807 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 | ||| | ||||||||| | ||| |||||||| |||||| ||| | |||| | | Sbjct 13806 TTCAACCCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACG 13747 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 |||||| || |||||||| ||||| ||||| | || || | |||||| | |||||| Sbjct 13746 GACTTCTTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCA 13687 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCT 78178 |||||| | || || || | | ||||||| ||||| || || ||||||| |||||| Sbjct 13686 TGGTTCCAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCT 13627 Query 78179 GGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 || ||||| ||||| ||||| |||||||| | | || ||||| |||||||||||| Sbjct 13626 AGCTGTGTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCC 13567 Query 78239 AGAAATATAACTTCCACTTGCGCGAATATTA-CTA-ATGGATATCCCTATTCCTCCTGCC 78296 || || || || | || | ||| | || ||| || ||||| || || || Sbjct 13566 AGCTATGTAGGACCCTTTAGCCCTTATACAATGTACATG--TAGACCTATACCACCAGCT 13509 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 || || || | || || |||| | ||||| || || || || |||||||| || Sbjct 13508 GATTTTGAAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCT 13449 Query 78357 ATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAA 78415 |||| | || ||| ||||| ||| | || | ||| | ||| || | Sbjct 13448 TTCATAGCTATTAAG-AAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAG 13390 Query 78416 TGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGA 78475 ||| ||| |||||| ||||| |||||||||| | | |||||||| | || || | Sbjct 13389 TGTTGGACTTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGC 13330 Query 78476 TTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | || ||| ||||| | || || | ||| | ||||||||| ||||| || Sbjct 13329 ATCAACATCTTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTC 13270 Query 78536 A 78536 | Sbjct 13269 A 13269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||||||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAAT 78661 ||| ||||| || || | || | |||| ||| | || |||| || | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTTGTTATTTATGACAAT 12970 Query 78662 AT 78663 || Sbjct 12969 AT 12968 >seq995 Length=359585 Score = 104 bits (114), Expect = 3e-17 Identities = 160/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| ||| ||| | |||||| || || | || ||||| || ||||| ||||| Sbjct 124825 TCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTTTC 124884 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || | || || |||||| |||||||| || || || || || || || Sbjct 124885 AACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGGCA 124944 Query 48285 GTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 ||| ||| || || || | | ||| | || ||||||| || |||||||| || Sbjct 124945 ATAATTCTTTCACCAAAGGTTGCCGTCTT-GCTGCCTATCCACTGTAAGGCCCAATCTGC 125003 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 ||||||||||||||| || | |||||| || ||||| || | |||| Sbjct 125004 CTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAACAAGAAGT 125050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694638547173760