Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq209 499 4e-136 seq995 100 4e-16 >seq209 Length=133430 Score = 499 bits (552), Expect = 4e-136 Identities = 1210/1813 (67%), Gaps = 32/1813 (2%) Strand=Plus/Minus Query 75333 TTTCAGAATTACATACTACTGACTTT-ATTTTATTCTTATCCAACGTGAACTGAATGGGA 75391 ||||||| | || | || | ||||| | |||| |||||| | ||||| ||||| | | Sbjct 15073 TTTCAGATTGACC-ATTAGTAACTTTCACTTTAGACTTATCAACTGTGAATTGAATTGCA 15015 Query 75392 GAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCG 75451 | ||||||||||| |||| ||||||||| || ||||| || |||| |||| | Sbjct 15014 TTAGCAGCTGGTTTTGTGCGTAAATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCA 14955 Query 75452 TAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGAC 75511 || || || || ||||| || |||| | || || || | |||||| || | || Sbjct 14954 TAAAAGTGTATTGATGTTAACTTTCCATAATTAGGTTCAGCAACATGAATGTTGAAAGAT 14895 Query 75512 TGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGA 75571 || ||||| || ||||| || || |||||||| ||||||| || | ||||| | Sbjct 14894 TGGCTTTGGTCAATGAATGCACCCCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGAT 14835 Query 75572 ATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATT-TGTATTTTGA 75628 |||||||||| || || | | | | |||| || | || | | || | |||||||| Sbjct 14834 ATTTCCCAAACTGTCTTATACAAATCTCTGATTTCTTTAGGTATTGCTTCTATATTTTGA 14775 Query 75629 ATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCG 75688 || || || | ||| || ||| || || || |||| ||| || | | | Sbjct 14774 ATAGAACCATTGTTGTGTATTATAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGT 14715 Query 75689 GTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATAC---TCTT 75745 || ||| | ||||| | || |||| || | ||||||||||||||| ||||| |||| Sbjct 14714 GTCAAATCCCTAAGCAAGTGGTGATTGACCACTTGAAATTCTCCAGATAATACACGTCTT 14655 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 || ||||| || ||| ||||||| | |||||||| || || | |||||| ||| Sbjct 14654 TGA---TAAATGTTTGAAGTAAATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCA 14598 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 75865 || || || || ||||| ||||| | | ||| || | ||||||| || ||| Sbjct 14597 GTAGATGCCGTGGGCATGGGTGCTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATT 14538 Query 75866 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTAT 75925 || || || ||| ||| ||||| | |||||||||| |||||| | ||| ||| Sbjct 14537 TTTTCCTTAAGAACAGACCAGTCCCACAAATCTGATGGTGTTTTATCCCACATATCATAT 14478 Query 75926 TGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCA 75985 |||| |||||| | || || ||| | ||| || || || || || || Sbjct 14477 TGTAAAATTCCTTGACTGGCTGGACTTCCTTCATAAGTGCTATATACTCCATCTTTCTCT 14418 Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || ||||| | || || || || || || || || |||||||| || || || || | Sbjct 14417 GCAAGTTCACTGCTTGCTTCCAAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGT- 14360 Query 76046 AGATCTTG--CGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | |||| |||| ||| ||| | ||| | | | | || ||| | || |||| Sbjct 14359 TCAACTTGATAGCTTTCTCACTTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTA 14300 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 | || ||||||||||| || || || ||||| || ||| || ||| ||||||||||| Sbjct 14299 GACCTTGAACTCCAATTCCTATGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAA 14240 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGT 76223 |||||| | || | ||| || ||||| || |||||| | || ||| ||| | Sbjct 14239 CTGGGTAAAAGTTGACATCAATTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTT 14180 Query 76224 CCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAG 76280 | |||| || ||||| || ||| | || | |||||||| || || ||||| | Sbjct 14179 CTTTTAACTTTTCAAAATTGAAAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTG 14120 Query 76281 ATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATA 76340 | || | |||||| || || || |||| | | || | || || || || || | Sbjct 14119 AAGCCAAATTACAGACTGCAACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGA 14060 Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 |||| || || || || || |||||||||| ||| ||||| ||| | || || ||||||| Sbjct 14059 GATTGCTGCATTTTATTGTGCCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCT 14000 Query 76401 TATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460 |||| | | |||| |||||||| || | || | ||| | ||| | |||||| | | Sbjct 13999 TATATAACATGTACGGTGTTCCAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACA 13940 Query 76461 CTCT-AGCTTTTATTATAGATTTGTATCGCTTCTCTCT--TTCATATTGTGTATATAACC 76517 ||| ||||||| | | || | || | ||| |||||||| | ||||| | Sbjct 13939 -TCTGCGCTTTTA--CTTGCTTAACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCT 13883 Query 76518 GTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577 |||||| || ||||||||| ||| | ||||| || |||| |||||||| | Sbjct 13882 TTTCAAACTCTTCTCCCCAACAATCTGAAAGGCCAGGGCAATCATGGGGACACATAATAC 13823 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | | || | ||||| ||||||||| | ||| |||||||| |||||| || Sbjct 13822 TCCAATTTTCGTTTTTTTCAACCCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAA 13763 Query 76638 ATAGATCTCGGGTTCTACG---TTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACT 76694 | | |||| || ||| |||||| || |||||||| ||||| ||||||| ||| | Sbjct 13762 ACAACTCTC---TTGCACGGACTTCTTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATT 13706 Query 76695 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 | | |||||| | |||||||||||| | || || || | |||| |||| ||||| | Sbjct 13705 CAAAAATATCTGCATGCCATGGTTCCAAGTAAATAGCAAATGCACCAGGTCTCTTATTGC 13646 Query 76755 CTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGT 76814 | || ||||||| |||||| || ||||| ||||| ||||| |||||||| | | || | Sbjct 13645 CGCCTTGATCTACATATCTAGCTGTGTTGTTATATACTCTTAACATTGGTACCAATCCAT 13586 Query 76815 TAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATA 76874 |||| ||||||||||||| || || || || | ||| | | | || Sbjct 13585 TAGAAACTCCATTTGTTCCAGCTATGTAGGACCCTTTAGCCCTTATACAATGTACATGTA 13526 Query 76875 GGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGC 76934 | ||||| || || || ||| || || | ||||| |||| | || ||||| || | Sbjct 13525 GACCTATACCACCAGCTGATTTTGAAATCATTGCACATTGTTTAAGAGTATCATATATTC 13466 Query 76935 CCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 | || ||||| || || |||| | || ||| ||||| ||| | || | | Sbjct 13465 CTTCAATACTGTCGTCTTTCATAGCTATTAAG-AAACAAGAAGAAAGCTGTGGCCTCGGA 13407 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || | ||| || | ||| ||| |||||| || || |||||||||| | | ||| Sbjct 13406 GTAGCAGCAGAGAAAAGTGTTGGACTTGCATGTGTAAAGTATTTTTCAGATAACAAGTTG 13347 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| | || | || || | ||| ||| ||||| | || || | ||| | | Sbjct 13346 TATGTATTGATGGCAGCATCAACATCTTCACCATGTATTCCAATTGCAACTCTCATAAGC 13287 Query 77114 ATATGCTGAGGTC 77126 |||||||| |||| Sbjct 13286 ATATGCTGTGGTC 13274 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 ||||||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAAT 77256 ||| ||||| || || | || |||||| ||| | ||||| | || | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTTGTTATTTATGACAAT 12970 Query 77257 AT 77258 || Sbjct 12969 AT 12968 >seq995 Length=359585 Score = 100 bits (110), Expect = 4e-16 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| ||| ||| | |||||| || || | || ||||| || ||||||||||| Sbjct 124825 TCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTTTC 124884 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || || | || || |||||| |||||||| || || ||||| ||||| || Sbjct 124885 AACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGGCA 124944 Query 46774 ACAAGTCTCTCTCCGTA-ACTGGCATCATTATG--AATCCACCTTTGAGCCCAATCAGCC 46830 | || ||| || || | || | || | || |||||| | |||||||| ||| Sbjct 124945 ATAATTCTTTCACCAAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATCTGCC 125004 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 || ||||||||||| || | |||||| || ||||| || | |||| Sbjct 125005 TTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAACAAGAAGT 125050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903351706880