Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq286 131 4e-25 seq2618 123 6e-23 seq1176 105 2e-17 >seq286 Length=933739 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| | ||| | ||||||||||||||||||||| || ||||| || | ||| || Sbjct 782217 CCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGT 782158 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| ||| || || || || | || |||||||| | | || || Sbjct 782157 GCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGAATGCC 782098 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||||||||| || ||| |||| | | ||||||| || ||||| | Sbjct 782097 TTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAA 782038 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| ||||| || | || || ||||| | ||||| Sbjct 782037 AGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| |||||||| || || ||||||||||| || | | || | |||||| Sbjct 378067 AGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCT 378008 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || ||||| ||||| | | ||| ||||| || | Sbjct 378007 TCAAGCTGCTTT--CCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGT 377950 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||||||| |||| | |||| ||| ||| || || ||||| || | Sbjct 377949 CCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGG 377890 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | |||||||| || | ||||| Sbjct 377889 TCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 377856 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||||| ||||| ||||| || ||||| | | ||| | |||||| Sbjct 781523 AGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGAAAGAGTGCGTCCATCT 781464 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| ||||| ||||||||||| | | |||||||||||| ||| Sbjct 781463 TCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCCTTATCT 781404 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || ||| | || | | |||| || || ||||| | || || ||| Sbjct 781403 TGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCCACTTCCAATGTGATGGTT 781344 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 781343 TTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 118 bits (130), Expect = 2e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| || || |||||||| ||||| || ||||| | || ||| | ||||| || | | Sbjct 781743 ATGCAGTGTCGACTCTTTCTGGATATTATAATCTGATAGAGTACGTCCATCCTCCAATTG 781684 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| |||||||||||||| | |||||| || | | ||| |||||||| ||||| ||| Sbjct 781683 CTTT--CCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTGTCTTGGATT 781626 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || ||| |||| | | ||||||| || ||||| | ||| || || ||||| Sbjct 781625 TTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCAACTTCTAAAGTGATTGTCTTGCCA 781566 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | |||||| || || | |||||| Sbjct 781565 GTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 114 bits (126), Expect = 3e-20 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| ||||| || ||||| ||||| ||||||| | || || |||||||| | || Sbjct 377602 TGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCTTCCAATTGC 377543 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || |||||||| |||||||| | | || || || || |||||||||| Sbjct 377542 TTT--CCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCTTGAATTT 377485 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | |||| || || || || | ||||| ||||| |||| Sbjct 377484 TAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGTTTTACCCG 377425 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | ||||| ||||| || | |||||| ||| Sbjct 377424 TAAGAGTTTTCACAAAAATCTGCATCTTA 377396 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || |||||||| || ||||| | | ||| | |||||||| || ||| || Sbjct 781280 GTAGATTCCTTTTGGATATTATAATCAGAAAGAGTGCGTCCATCTTCAAGCTGTTTACCA 781221 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || ||||| ||||||||||| | | |||||||||||| ||||| ||||| || Sbjct 781220 GCAAAAATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGGATTTTAGCCTTC 781161 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||||||| || ||||| | || || || ||||| || | |||| Sbjct 781160 ACATTTTCAATAGTGTCTGATGGTTCAACTTCCAATGTGATTGTCTTGCCAGTTAAAGTC 781101 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| |||||| Sbjct 781100 TTAACAAAGATCTGCAT 781084 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||||||||| || ||||||||||| || | | ||| | |||||||||| Sbjct 380114 CAAG-TGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTCTA 380056 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| || | ||||||||| | | ||| ||||| || || |||| Sbjct 380055 GTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTGAA 379996 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||| |||| | |||| ||| || ||||| | ||| || || || | Sbjct 379995 TTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTCC 379936 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| |||| ||||| Sbjct 379935 CTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 109 bits (120), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| || || |||||||| ||||| || ||||| | || || | ||||| || | | Sbjct 781971 ATGCAGTGTCGACTCTTTCTGGATATTATAATCTGATAGTGTACGGCCATCCTCCAATTG 781912 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| |||||||||||||| | |||||| || | | ||| |||||||| ||||| ||| Sbjct 781911 CTTT--CCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTATCTTGGATT 781854 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || ||| |||| | | | ||||| || ||||| | ||||||||| ||||| Sbjct 781853 TTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCACTTCTAAAGTAATAGTCTTGCCA 781794 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | || || ||||| | ||||| Sbjct 781793 GTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| |||||||| || || ||||||||||| || | | || | |||||| Sbjct 379891 AGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCT 379832 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || ||||| ||||| | | ||| ||||| || | Sbjct 379831 TCAAGCTGCTTT--CCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGT 379774 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||||| |||| | |||| || ||| || || | ||| || | Sbjct 379773 CCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGG 379714 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | |||||||| || | ||||| Sbjct 379713 TCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379680 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || ||||| || || ||||||||||| || | | || | |||||| Sbjct 378523 AGGACAAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCT 378464 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || ||||| ||||| | | ||| || || || | Sbjct 378463 TCAAGCTGCTTT--CCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATACCCTCTTTGT 378406 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||||| |||| | |||| || ||| || || | ||| || | Sbjct 378405 CCTGAATCTTGGCTTTGACATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGG 378346 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | |||||||| || | ||||| Sbjct 378345 TCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 378312 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || ||||| || || ||||||||||| || | | || | |||||| Sbjct 378979 AGGACTAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCT 378920 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || ||||| ||||| | | ||| ||||| || | Sbjct 378919 TCAAGTTGCTTT--CCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGT 378862 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || |||||| |||| | |||| || ||| || || | ||| || | Sbjct 378861 CCTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGG 378802 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | |||||||| || | |||||| Sbjct 378801 TCTTCCCTGTCAATGTCTTCACAAATATCTGCAT 378768 >seq2618 Length=201275 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || || |||||||| || || || ||||||||||| |||| | ||| | Sbjct 161639 AGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGG 161698 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | ||| || |||||||| | | ||| ||||| | | ||||||||| Sbjct 161699 CCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCC 161758 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| || ||| | || | |||| ||| ||| || ||||| || Sbjct 161759 TTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTG 161818 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || || ||||||| ||||||||| Sbjct 161819 ATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 >seq1176 Length=404280 Score = 105 bits (116), Expect = 2e-17 Identities = 135/185 (73%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||||||||||||||||||| || ||||| || | ||| || | || Sbjct 385190 TCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGTGCGACC 385131 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||||| ||| || || || || | || |||||||| | || |||||||| Sbjct 385130 ATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTAGGGGAATGCCTTCCTT 385071 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| || ||| |||| | | ||||||| || ||||| | ||| || Sbjct 385070 ATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAAAGTGAT 385011 Query 152069 AGTTT 152073 |||| Sbjct 385010 -GTTT 385007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153769294881764