Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq286 127 2e-24 seq2763 100 2e-16 seq170 82.4 6e-11 >seq286 Length=933739 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || || ||||||||||| | || ||||| Sbjct 377397 AAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCG 377456 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | |||||| |||||| || ||||| || |||| ||| Sbjct 377457 TCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCCCGAC 377516 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||||||||||||| ||| || || |||||||||||| | || | |||||||| Sbjct 377517 CAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTAT 377576 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| |||||||| || || ||||| |||||||| || ||||| Sbjct 377577 AACATTCAAAAGGAATCTACCCTTCACTTAGTTTTGCGTCTTCGTGGTGG 377626 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||||||||| || |||| || |||||||| || ||||| || || Sbjct 377627 AATGCAAATTTTTGTCAAGACCCTGACTGGTAAAACCATCACATTGGAAGTAGAGCCTTC 377686 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | ||| | || ||| ||||||| |||||||| ||| |||| || || Sbjct 377687 TGACACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAAGAGGGCATTCCTCCAGACCA 377746 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | ||||| | ||| || ||||| | |||||| | || | |||||||||| Sbjct 377747 ACAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAA 377806 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || ||| |||| | |||||| | ||||| Sbjct 377807 CATTCAGAAGGAATCTACCCTCCATCTAGTCCTTCGTCTGAGAGGTGG 377854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| ||||| ||||| |||||||| || || | ||| ||||| Sbjct 780855 AATGCAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATC 780914 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | ||||| || ||| || || ||||| | || || || Sbjct 780915 GGATACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 780974 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 ||| | ||||| | ||| || || |||||||||||| | | ||| | | ||||| Sbjct 780975 ACAGCGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCT--CTGATTAC 781032 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| ||||||||| | |||||||| ||||| || | ||||| Sbjct 781033 AATATCCAAAAGGAATCTACATTGCATTTAGTACTGCGTTTGAGAGGTGG 781082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| || || ||||| || ||||| | ||| |||||| Sbjct 781768 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATTACTTTAGAAGTGGAACCATCA 781827 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||||| || || ||||| | || ||||| Sbjct 781828 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCTCCTGATCAG 781887 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111277 || | ||||| | || || || |||||||| ||| | | ||||| | ||||||| Sbjct 781888 CAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGCCGTACACTAT--CAGATTATA 781945 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| || ||||| || ||||| |||||||| || |||||| | || || Sbjct 781946 ATATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGG 781994 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || ||||| || || ||||| || ||||| ||||| Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| ||||||||||| | || || || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | ||| || |||||| |||||||| | ||| | ||||||| ||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || |||||||| | |||||| | ||||| Sbjct 379632 ATCCAGAAGGAATCCACTCTCCATTTAGTCCTTCGTCTGAGAGGTGG 379678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || || || ||||| || || || ||||| ||||| Sbjct 781084 ATGCAGATCTTTGTTAAGACTTTAACTGGCAAGACAATCACATTGGAAGTTGAACCATCA 781143 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || ||||| || || ||||| | || || || Sbjct 781144 GACACTATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAG 781203 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||||| ||| || ||||| | |||||| ||| | | ||||||||| Sbjct 781204 CAGAGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGCACTCTTTCTGATTATAAT 781263 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||||||| |||||||||| ||||| || | ||||| Sbjct 781264 ATCCAAAAGGAATCTACATTACATTTAGTACTGCGTTTGAGAGGTGG 781310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||||||||| || ||||| |||||| Sbjct 781312 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 781371 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| || || ||||| | || || || Sbjct 781372 GACACCATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAG 781431 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||||| || || || ||| | |||||| ||| | | ||||||||| Sbjct 781432 CAGAGACTTATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACTCTTTCTGATTATAAT 781491 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||||||| | ||||| || ||||| || | ||||| Sbjct 781492 ATCCAGAAAGAATCTACATTGCATTTGGTCCTGCGTTTGAGAGGTGG 781538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| || || ||||| || || || | ||| |||||| Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| || || |||||| ||||| || || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||| | |||| ||| || ||||| | |||||| || | | ||| | || || | Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTAT--CTGACTACA 782173 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 |||| |||||||| ||||| || ||||| || ||| Sbjct 782174 ATATTCAAAAAGAGTCTACTCTTCATTTGGTCTTG 782208 >seq2763 Length=379199 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 || || || |||||| | || || | |||||||||||| ||||| || || || ||||| Sbjct 320160 AATGGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCTTTTGTAAGGTGGAG 320101 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 |||||| | ||| || ||||||||||| || ||||||| |||||||||| || || Sbjct 320100 ATAATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAACGATGGGCACCGCAA 320041 Query 104855 TGCCCGTTTTTGCGA 104869 || || ||| || || Sbjct 320040 TGTCCTTTTCTGAGA 320026 >seq170 Length=994537 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 107558 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGCGT 107617 |||||| | ||||| ||||| | | | |||| ||| ||||| |||| ||| | ||| Sbjct 674158 GTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTTCGT 674217 Query 107618 AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGCAC 107677 || || ||||| ||| || |||||||| || || | ||||||| || |||||||| Sbjct 674218 GGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACTCGTGCAC 674277 Query 107678 GTGAAAACCGTGC 107690 ||| ||||| ||| Sbjct 674278 GTGGAAACCATGC 674290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421793289369184