Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq286 140 3e-28 seq2618 107 2e-18 seq1698 82.4 7e-11 seq170 82.4 7e-11 >seq286 Length=933739 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||||||||||| |||||||||||||| Sbjct 377845 AGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGA 377786 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || || || ||||||||||| | |||| || ||| Sbjct 377785 CCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCT 377726 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| ||||||||| |||| | | ||||| | ||| || |||| || Sbjct 377725 TTGTCC-TGAATTTTTGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGT 377667 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| ||||| ||||| || ||||| ||||| Sbjct 377666 GATGGTTTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 377628 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||||||||||| |||||||||||||| Sbjct 379213 AGACGAAGGACTAGATGGAGAGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGA 379154 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || || || ||||||||||| | |||| || ||| Sbjct 379153 CCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCT 379094 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || || | ||| | | ||||| | ||||||||||| || Sbjct 379093 TTGTCC-TGAATCTTGGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGT 379035 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| |||||||| || || ||||| Sbjct 379034 GATGGTCTTTCCTGTCAATGTCTTTACAAATATTTGCAT 378996 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || |||||||| ||||| ||||| ||||||||||| Sbjct 378073 AGACGAAGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGA 378014 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||||||||| | ||| | || || Sbjct 378013 CCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCT 377954 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| |||| || | | ||||| | ||||||||||| || Sbjct 377953 TTGTCC-TGAATTTTAGCTTTGACATTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGT 377895 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || || ||||| Sbjct 377894 GATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 377856 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || |||||||| ||||| ||||| ||||||||||| Sbjct 379897 AGACGAAGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGA 379838 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||||||||| | ||| | || || Sbjct 379837 CCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCT 379778 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| || | ||| | | ||||| | ||||||||||| || Sbjct 379777 TTGTCC-TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGT 379719 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || || ||||| Sbjct 379718 GATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379680 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || |||||||| ||||| ||||| ||||||||||| Sbjct 378529 AGACGAAGGACAAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGA 378470 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||||||||| | ||| | | ||| Sbjct 378469 CCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATACCCTCT 378410 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || |||| || | | ||||| | ||||||||||| || Sbjct 378409 TTGTCC-TGAATCTTGGCTTTGACATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGT 378351 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || || ||||| Sbjct 378350 GATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 378312 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || |||||||| ||||| ||||| ||||||||||| Sbjct 378985 AGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGA 378926 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||| || || || ||||| | ||||||||| | ||| | || || Sbjct 378925 CCATCTTCAAGTTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCT 378866 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || | ||| | | | ||||| | ||||||||||| || Sbjct 378865 TTGTCC-TGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGT 378807 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 378806 GATGGTCTTCCCTGTCAATGTCTTCACAAATATCTGCAT 378768 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || | ||| || ||| |||||||| || || ||||||||||| ||||| Sbjct 379441 AGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGA 379382 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || || ||||| ||||| ||||| ||||| | || | || ||| Sbjct 379381 CCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCT 379322 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| |||| || | ||| | | ||||| | ||||||||||| || Sbjct 379321 TTGTCC-TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGT 379263 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || || ||||| Sbjct 379262 GATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || | || || || ||||| ||||||||||| |||||| Sbjct 377626 CCACCACGAAGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAG 377567 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || | ||||| ||||| || || || | || ||||| | ||| Sbjct 377566 AGGGTCCTTCCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGA 377507 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || | | ||| |||| |||| || | | |||||| || || || Sbjct 377506 ATACCCTCTTTAT-CTTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAAC 377448 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 ||| | || || ||||||||||| || || || || ||||||||||| ||| Sbjct 377447 CTCTAATGTAATGGTTTTACCCGTAAGAGTTTTCACAAAAATCTGCATCTTA 377396 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || | ||| || ||| ||||||||||| || ||||| ||||| ||||| Sbjct 378301 AGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAGAGAGTGCGA 378242 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || || ||||| ||||| ||||| || || | |||| | || Sbjct 378241 CCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCTTCT 378182 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| | || || | ||| | | ||||| | ||||||||||| || Sbjct 378181 TTGT-CTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACCTCCAAAGT 378123 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || || ||||| Sbjct 378122 GATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 >seq2618 Length=201275 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| |||||||| ||||| |||||||| || || || | || || Sbjct 161648 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCC 161707 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | || || || ||||| |||| ||||||||||| | |||| | |||||||| | Sbjct 161708 AATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 161767 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||||| | ||||||||| | || || || ||| Sbjct 161768 ATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTA 161827 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || |||||||| |||||||| || Sbjct 161828 CCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 >seq1698 Length=195807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 |||||||| || || ||| ||||||||| ||||| ||||| |||||||| | | || Sbjct 124200 AACACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTGCCATCT 124259 Query 41711 TCGAGCTGCTTGCCGGCGAATATCA 41735 || ||||||||||||||||| |||| Sbjct 124260 TCCAGCTGCTTGCCGGCGAAGATCA 124284 >seq170 Length=994537 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 49617 GCCGATGATGCCGCAGCCGAGTC-TGCTGCCAGAGTTGCCGGTGATTTTGCTCTGCTCGT 49675 |||||||| || ||| ||| | |||| |||| |||||||||| | ||||| |||||| Sbjct 673325 GCCGATGACCCCACAGGCGATGCGTGCT-CCAGCGTTGCCGGTGGTCTTGCTGAGCTCGT 673383 Query 49676 CGTCGCCCAGGCCAAAGTCGTCCTCCATGGCGTGCACCACGATGCTGCGCCCGAGAATGT 49735 | |||| | ||| | |||||| |||||||||||| | ||||||||| || Sbjct 673384 GGCCGCCGATGCCGAGGTCGTCGGGATCGGCGTGCACCACCAGCGTGCGCCCGATGATAC 673443 Query 49736 TGTGCGGGCCGAACAGCGA 49754 ||||||| ||| | ||||| Sbjct 673444 TGTGCGGACCGCAGAGCGA 673462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283866660800