Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq172082 143 3e-29 seq172035 87.8 2e-12 >seq172082 Length=56793 Score = 143 bits (158), Expect = 3e-29 Identities = 392/600 (65%), Gaps = 8/600 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || ||||| || ||||||| |||| |||| || ||||| || || | | ||| Sbjct 14680 ATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTAC 14739 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || ||||| || || || ||| || || || ||||| ||| ||| || | Sbjct 14740 GGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATGATTTCAAT 14799 Query 16918 AACTCGTTCC----TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAAT 16973 || || ||| | ||||| |||| | |||||||||||| | | || |||| Sbjct 14800 AATTCTATCCCTACTAGGACGTTGTACC----AAATGTTTAAACATTAAAACAGCAAAAT 14855 Query 16974 CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT 17033 | |||||||| ||||| || | ||| | ||| || || ||||| | || ||||| Sbjct 14856 CACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAA 14915 Query 17034 TTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGA 17093 || |||||||| | ||||||||||| || || ||| ||||| |||||||||| Sbjct 14916 GACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGA 14975 Query 17094 CGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCT 17153 | | ||||| || || | || || | | | || ||| |||||| | Sbjct 14976 CAGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGACA 15035 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCT 17213 |||| ||||| || |||| | ||| ||||| || || ||||||| | | Sbjct 15036 TGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATATT 15095 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 || || | | || | || || || || || | | || |||||||||||||||| Sbjct 15096 CTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTA 15155 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 || |||||||| || || || || || || || || || || | || ||| || || Sbjct 15156 CATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTT 15215 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 | |||| ||||| | |||||||| || || || || ||| ||||| || || |||| Sbjct 15216 GGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCA 15275 >seq172035 Length=46076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA--C 119918 ||||| || || |||||||| | ||||| || || |||||||| ||||| | | Sbjct 18728 CCCACATAACCATTGGGATCTCTACCATCCAAACTATACTTATCGTT-AAGTAAAATGGC 18786 Query 119919 AGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | | || || || ||| |||| || ||||||| | || ||||||||||| |||| Sbjct 18787 ATATTCTAAA-GCCTGTTCGGGAGATTCAGTCCATTCTAAAATCTTTTTAGCCCAATACA 18845 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | ||||| | ||||||||||| || || |||| ||||| |||||| | ||||||| Sbjct 18846 TGCGTAAAAAGCCATGCATTTTCCCCTCCTTTACCAATTGAATTTGTGCCGAATTCCATA 18905 Query 120039 AGGGATCGTGTGTA 120052 | ||| || ||| Sbjct 18906 AATCATCATGAGTA 18919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516300514672800