Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq172035 98.7 1e-15 seq151072 89.7 5e-13 >seq172035 Length=46076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 119005 CATAGACAT-CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAA 119063 ||| ||| | ||||| || || ||||||||| | || || || ||||||||| |||| Sbjct 18718 CATCGACTTACCCACATAACCATTGGGATCTCTACCATCCAAACTATACTTATCG-TTAA 18776 Query 119064 GTAGA--TACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttA 119121 ||| | || | | ||| || ||| |||| | | ||||||| | || |||||| Sbjct 18777 GTAAAATGGCATATTC-TAAAGCCTGTTCGGGAGATTCAGTCCATTCTAAAATCTTTTTA 18835 Query 119122 GCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCG 119181 ||||| ||||| |||||| | || |||||||| ||||| || | || |||| |||||| Sbjct 18836 GCCCAATACATGCGTAAAAAGCCATGCATTTTCCCCTCCTTTACCAATTGAATTTGTGCC 18895 Query 119182 GTGTTCCATAGAGGATCGTGTGTA 119205 | ||||||| | ||| || ||| Sbjct 18896 GAATTCCATAAATCATCATGAGTA 18919 >seq151072 Length=631 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTT 16258 ||| || || || ||||| | ||||||||||| ||||| ||||| ||| |||| Sbjct 156 ACAAGCAAACTCACAATGCATGCCTTCGTCTCT--TGATATTAGTTCATTGCTGTAAGTC 99 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||||||||| || |||||| ||||| || || ||||||||||| || ||| Sbjct 98 AGACCTGGCATTAAGTTTCTTTTCTTCAACCAAAAGATAGCAGCAAATGAACCACTAAAA 39 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTT 16355 || ||||| |||||| ||||||| || | |||| || Sbjct 38 AAGATACCTTCAACACATGCAAATGCTAGCAATCTTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510184064807200