Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq175891 113 4e-20 seq188148 102 7e-17 seq185055 98.7 8e-16 >seq175891 Length=10111 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| ||||| ||||||||| ||| || || | Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| |||||||||||| | || |||||| Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || || || || ||||||||| ||| || ||||||| || Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAAC 9409 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||||||||| |||||| |||| || || Sbjct 9410 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCG 9444 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| ||| | || || || || ||||| ||||| ||| || ||||| Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | ||||| |||||| ||||| || ||| | ||| |||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | || ||||| || |||||||||||||| ||| || |||||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||| |||||||| ||||| |||| |||| Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGTTCTACG 8304 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| ||||| || || || ||| || || | Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| |||||||||||| | || ||||||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || || |||||||||||||| ||| || ||||||| || Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||| ||||| |||||| |||| || || Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTTGCG 9672 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| |||||||| ||||||||||| || || || || | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || || ||||| | ||| ||||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| ||||||||||||||||| || || | ||||||||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || | || |||| ||||| ||||| || || Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGG 8544 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| || ||||| ||||| ||||| || ||||| | Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || ||||| || ||||||||| | ||| ||||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | ||||| || || ||||||||||||||| || || |||||||||| Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| |||||||| |||||| | || ||||| | || ||||| Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGG 8772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || || || ||||| || || ||| ||| || || | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| ||||| || ||||||||| | ||| ||||||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || ||||||||||||||| | || || | || ||||| Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||| |||||||| |||||| | || ||||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACG 8988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || ||||| || ||| ||| || || | Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCT 9061 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| ||||| |||||| | ||| ||| ||| Sbjct 9062 GATACTATAGAGAATGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAA 9121 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || || || || ||||||||| || || | ||||| || Sbjct 9122 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATAAC 9181 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||||||||| |||||| |||| || || Sbjct 9182 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCG 9216 >seq188148 Length=18106 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| || || || |||||||||||| ||| || || | Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||||| || ||||||||| | ||| ||||||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | ||||| || || ||||||||||||||| || || |||| ||||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || ||||||||||| ||| | || |||| Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGT 3631 >seq185055 Length=12631 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | ||| |||||||||| | | ||||| || ||||||||||| || Sbjct 12559 GATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGCAAACAATTAGAG 12500 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || | || ||||| || ||||||||||||||||| || ||||| || Sbjct 12499 GATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTCCATTTGGTGCTA 12440 Query 25248 CGATTACGAGGAGG 25261 || | || ||||| Sbjct 12439 CGTCTTCGCGGAGG 12426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409833232458440