Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq172082 214 2e-50 seq188148 113 5e-20 seq22680 109 6e-19 seq175891 89.7 5e-13 seq5262 87.8 2e-12 >seq172082 Length=56793 Score = 214 bits (236), Expect = 2e-50 Identities = 471/704 (67%), Gaps = 8/704 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || |||||||| ||||| || || || |||||||| | |||| Sbjct 15380 AGGCTGAAGCATCCTTTTGGACCGTTGAGGAAGTTGATCTCTCCAAGGATAATTCTGACT 15321 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 |||| | | | |||||| || || ||||| || ||||| ||||| || || |||| Sbjct 15320 GGGAAAGACTTACCGACAATGAACGTCATTTTATTTCACACGTTCTGGCATTCTTTGCCG 15261 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| || || || || || ||||| || || |||||| | || |||||||| || Sbjct 15260 CTTCCGATGGTATAGTTAATGAAAATCTTGTTGAACGTTTCTCCCAAGAGGTGCAAGTAA 15201 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || || ||||| || || || || |||||||| || || ||||| ||||||| Sbjct 15200 CAGAGGCTCGTTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCCGAAATGT 15141 Query 116895 ATTCGACCCTCATCGACACGTACGTGC--GCTCTTCGG--AGGAGAAGCTCCGTTTGTTG 116950 || | | || ||||| ||| | | || | | ||||| || ||| Sbjct 15140 ATAGTATTTTAATTGACACTTACATTAAGGATCGTGATCAACGAGAATATCTATTT---- 15085 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 || || || || || ||||| || || |||||||| ||||| || ||||| Sbjct 15084 AATGCTATTGAAACTATGCCAGCTGTTAAGCGTAAGGCCGATTGGGCCATGTCTTGGATT 15025 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | | ||| || || ||||| | | || || || || |||||||| | Sbjct 15024 TCATCTAAATCGGCTAATTTTGGTGAGCGTATTATTGCATTTGCTGCTGTCGAGGGTATT 14965 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || ||||| || | |||||||||||||||||||| || || ||||| ||| Sbjct 14964 TTCTTCAGTGGTAGTTTTGCTTCGATATTTTGGCTCAAGAAACGTGGTCTTATGCCTGGC 14905 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || ||| ||| || | ||||| | || |||||| | ||||| || ||||| | Sbjct 14904 CTTACATTCTCCAATGAATTGATCTCACGTGATGAGGGTTTACATTGTGATTTTGCTGTT 14845 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 || |||| || |||||||| || || || || || | | | || ||| | | Sbjct 14844 TTAATGTTTAAACATTTGGTACAACGTCCTAGTAGGGATAGAATTATTGAAATCATTTCG 14785 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 || ||||| || || ||| ||| | || || || || || || | || | || Sbjct 14784 GAGGCGGTAAAAATTGAACAGGAATTCTTAACAGATGCTCTACCCGTAAATTTGATTGGT 14725 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGA 117354 | ||||| || ||||||| |||| || ||||| || ||||| Sbjct 14724 ATGAATTGTAAATTGATGTCGGAATATATTGAGTTTGTGGCCGA 14681 >seq188148 Length=18106 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || |||||||| ||| | || ||||| | || Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||| | |||||||| || |||||| | || || Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || ||||| |||| || | || ||| | |||||||||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 40870 ATCCAGAAGGAGGCCAC 40886 ||||| ||||| |||| Sbjct 3659 ATCCAAAAGGAATCCAC 3643 >seq22680 Length=2395 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| || || ||||| || || || || || || || | || |||||| || Sbjct 1003 AAATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCA 944 Query 40748 CCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||||| | || | ||| || | |||||||| || ||||| | ||| Sbjct 943 CAGACACGATCGAAAACG-TAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGAC 885 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | || | ||| || |||||||| || || | | ||||| ||||||||| Sbjct 884 CAACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTAC 825 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||||| ||| | ||||| || Sbjct 824 AACATCCAAAAGGAAAGCACCTTACATCTGGT 793 >seq175891 Length=10111 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| ||||||||| | || |||||| | Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | || |||| |||||| ||||||| || || ||||| || ||| | || Sbjct 8147 TCTGATACTATTGAGAACG-TCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGA 8205 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | || || ||||| |||| |||| ||||| | ||| || Sbjct 8206 TCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTA 8265 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| || || || | || || ||| Sbjct 8266 CAACATTCAAAAAGAATCTACACTTCAT 8293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || | || ||||| || |||||| | || || || |||| | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGA-GCCATC 8832 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| |||||| ||||| | |||||||| || || ||| | || | Sbjct 8833 TGATACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 8891 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| || || ||||| |||| || | || || | ||||||| Sbjct 8892 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACA 8951 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || | || || || |||| || || Sbjct 8952 ACATCCAAAAAGAATCTACCCTTCACTTAGTATTACG 8988 >seq5262 Length=11329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| ||||| || ||||| || ||||| || |||||||| | || |||||| | | Sbjct 3379 AATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTC 3320 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | || | || |||| ||||||||||| || || | || || Sbjct 3319 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCA 3260 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | || || |||||| |||| || | || || || |||||||| Sbjct 3259 GCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAA 3200 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || |||| | || ||||| Sbjct 3199 TATTCAAAAGGAATCGACATTGCACTTGGTTTTGCG 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513979711409600