Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq172035 123 5e-23 >seq172035 Length=46076 Score = 123 bits (136), Expect = 5e-23 Identities = 268/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 189170 TTATCTCCGTGGCTACATTTTGGTCATGTATCCGCACAACGTGTTGCCTTAGAAGTATTA 189229 || || || ||| | ||||||||||| | || | ||| || || ||| ||||| || Sbjct 19185 TTGTCACCCTGGTTTCATTTTGGTCAAATTTCAGTACAGCGCTGTGTCTTGGAAGT--TA 19128 Query 189230 AAATGTATACGA-GAAAGCaaaaaaaaCGTT-GAAACGTTTATAGATGAAATAATTGTAA 189287 | ||||| |||| ||| || || | ||| | ||| || ||| |||||| | Sbjct 19127 AGGAGTATAAATCGAAATTTAAAGAATCGGTAGAAGCTTTTTGTGAAGAAGCAATTGTTA 19068 Query 189288 GAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATCCAGTCTA 189347 || |||| | | |||||||||||||||||||||||| | ||||||| | | ||| | Sbjct 19067 GACGAGAGTTGGCCGATAATTTTTGTTACTATAACAAAAACTATGATAATCTA-AGTGGA 19009 Query 189348 CTCATTCATGGGCCAG-AAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATA 189406 || | || || ||| |||||| | | ||||| || ||| | | | Sbjct 19008 CTGCATGATTGGGCAGCAAAAACTCTTAATGATCATCGCAAAGATAAACGTTCGCCTTGT 18949 Query 189407 TATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAA 189466 ||| | | | || |||| | || ||||||||| | ||||||| || ||||| Sbjct 18948 TATACATTGGATGAATTCGAGCGATCGCTTACTCATGATGATTTATGGAATTCGGCACAA 18889 Query 189467 ATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAG 189526 || || |||| | || || ||||||||| | |||||||| |||||||||||||| ||| Sbjct 18888 ATTCAATTGGTAAAGGAGGGGAAAATGCATGGCTTTTTACGCATGTATTGGGCTAAAAAG 18829 Query 189527 ATACTTGAATGGACTAGAACACCTGAAGACGCTTT 189561 || | ||||||||| | | || ||| | ||||| Sbjct 18828 ATTTTAGAATGGACTGAATCTCCCGAACAGGCTTT 18794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920975819298400