Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5262 114 2e-20 seq185055 104 3e-17 seq175891 98.7 1e-15 seq20636 89.7 8e-13 seq137448 86.0 9e-12 seq22680 86.0 9e-12 seq150344 84.2 3e-11 >seq5262 Length=11329 Score = 114 bits (126), Expect = 2e-20 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108 |||||| | ||| | || ||||| || || || ||||| ||| || ||||| || || | Sbjct 3151 TCCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGA-ATATTGTAGTCAG 3209 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || || ||||||||||||||||| || | ||||||||| || | Sbjct 3210 AAAGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTG 3269 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || ||||| ||| ||| | Sbjct 3270 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGA 3329 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | || |||||||| || ||||| |||| ||||||| ||||| |||||| Sbjct 3330 CCTCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCATT 3379 >seq185055 Length=12631 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | || |||||||| | ||||||||| || || || || || || Sbjct 12426 CCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12485 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| ||||||||||| ||||| || ||||| | ||| ||||| || ||| Sbjct 12486 AGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGA 12545 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 12546 ATGCCTTCTTTATCTTG 12562 >seq175891 Length=10111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || |||||||| | ||||||||||| || || ||||| || Sbjct 8316 CCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAC 8257 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || || |||||||| || ||||||||||| | ||| ||||| || ||| Sbjct 8256 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 8197 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || || |||||||| |||||| ||| ||| || Sbjct 8196 ATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACC 8137 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| ||||| || || || ||||| || || | ||| ||||||||||| Sbjct 8136 TCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| || || |||||||| ||||| ||||| || | || | | || Sbjct 8530 TAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTC 8471 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||||||||| | ||| ||||| || || |||||||| || || Sbjct 8470 TTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTGTC 8411 Query 146185 TTG 146187 ||| Sbjct 8410 TTG 8408 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | |||||||| || || |||||||| || | ||| | | ||| Sbjct 9441 AAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCT 9382 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || || || || || |||||||| | ||||||||| |||||||| |||||||||||| Sbjct 9381 TCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 9322 Query 146186 TG 146187 || Sbjct 9321 TG 9320 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | ||||| || || || |||||||| || | ||| | | || Sbjct 9669 AAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCT 9610 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| ||||| |||||||| | ||| ||||| |||||||| |||||||||||| Sbjct 9609 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 9550 Query 146186 TG 146187 || Sbjct 9549 TG 9548 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | |||||| || || | ||||||||||| || || || || || Sbjct 9000 CCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAC 8941 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || |||||||| |||||||| || || | ||| ||||| || ||| Sbjct 8940 AATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 8881 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 8880 ATACCTTCTTTGTCTTG 8864 >seq20636 Length=14080 Score = 89.7 bits (98), Expect = 8e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24013 CCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGA 24072 || || || | ||| |||||| ||||||| | | |||| | ||||||||| ||| || Sbjct 5336 CCCTTAACTAATTTTACATAACGACATTTACCCATCCATATAGCGTGTTGTTCCCAGGGG 5395 Query 24073 TCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATCA 24132 ||||| | | ||||| | |||| ||||||| | ||| || ||||| || |||| Sbjct 5396 TCATCATTTTCATCCCAATCCTTTAGACCACCACCGCAACTGAAACATTTGACGCGATCA 5455 Query 24133 CTTTTTCCAGTATAAAAGAATCCAGCTTCTGC 24164 | | | || ||||||||||| |||||||| || Sbjct 5456 CCTGTACCGGTATAAAAGAAACCAGCTTCGGC 5487 >seq137448 Length=735 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| || || | |||||||||| || || ||||||||| || Sbjct 29 CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCATTT 88 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || || | ||| || | || || || ||||| |||||||||||||| || ||||| Sbjct 89 AATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAGGT 148 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 149 ATCCCTTCTTTGTCCTG 165 >seq22680 Length=2395 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||||| ||||| |||||| || ||| || || || || || | Sbjct 775 CCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGTTA 834 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | ||||| || || || ||||||||||| || || ||||| Sbjct 835 AGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAGGG 894 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 895 ATTCCTTCTTTGTCTTG 911 >seq150344 Length=698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| ||||| | |||||| ||| || || ||||||||| || Sbjct 567 CCACCTCTCAGTCTCAATACAAGATGTAAGGTACTCTCCTTCTGTATATTATAGTCATTT 626 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | || ||||| ||||| |||||||||||||| || ||||| Sbjct 627 AATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAAATATCAATCTTTGCTGGTCAGGAGGT 686 Query 146171 ATTCCTTCTTT 146181 || |||||||| Sbjct 687 ATCCCTTCTTT 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741737661363200