Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq172082 269 2e-67 seq151072 111 1e-19 >seq172082 Length=56793 Score = 269 bits (298), Expect = 2e-67 Identities = 496/726 (68%), Gaps = 12/726 (2%) Strand=Plus/Plus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||| | ||| || | ||| |||||||| || ||||| | ||| || | ||| | Sbjct 14661 CCAATTCAACCAACAAACGATCGGCCACAAACTCAATATATTCCGACATCAATTTACAAT 14720 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || || || || || || | || |||||||| || | | ||| || || |||| Sbjct 14721 TCATACCAATCAAATTTACGGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCG 14780 Query 16170 CTTC---AATGATT---ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTT 16223 | || ||||||| ||| ||| | |||| ||| | | || || |||| Sbjct 14781 CCTCCGAAATGATTTCAATAATTCTATCCCTACTA------GGACGTTGTACCAAATGTT 14834 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 ||||||||| | ||||||||||||||| || || || || | || || || || | Sbjct 14835 TAAACATTAAAACAGCAAAATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGG 14894 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 | |||||||| || ||||| || || ||||| || | ||||||||| | ||||| || Sbjct 14895 AGAATGTAAGGCCAGGCATAAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTAC 14954 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 || ||||| ||||| || || || |||||||||| | |||||||| | | Sbjct 14955 CACTGAAGAAAATACCCTCGACAGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCG 15014 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 |||| | ||||| | ||||||| || || | |||||| ||| | | Sbjct 15015 ATTTAGATGAAATCCAAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTT 15074 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | || |||||||||| ||| | | || | | ||| ||| ||||| || |||| | Sbjct 15075 CAATAGCATTAAATAGATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAA 15134 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 |||||||||||| || || | ||| ||||| || || || |||||||| || || | || Sbjct 15135 TACTATACATTTCGGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAG 15194 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 | || | || ||| || || | | || | ||| | | ||||| |||||||| |||| Sbjct 15195 CCTCTGTTACTTGCACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCAT 15254 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 || ||| ||||| || || || | |||| |||||||| ||| || || | |||| Sbjct 15255 CGGAAGCGGCAAAGAATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTC 15314 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 || |||||||||| ||| || || | ||| || || || || |||||||| || || Sbjct 15315 TTTCCCAGTCAGAATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTT 15374 Query 16764 CAGCCT 16769 |||||| Sbjct 15375 CAGCCT 15380 >seq151072 Length=631 Score = 111 bits (122), Expect = 1e-19 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTA 16291 ||||||||| |||||||||| |||||||| || ||||| || || || || || Sbjct 156 ACAAGCAAACTCACAATGCATGCCTTCGTCTCTTGATATTAGTTCATTGCTGTAA--GTC 99 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAG 16351 ||||||||||||| || ||| || | |||||| ||||| |||||||||||| ||| Sbjct 98 AGACCTGGCATTAAGTTTCTTTTCTTCAACCAAAAGATAGCAGCAAATGAACCACTAAAA 39 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATC 16385 || ||||||||||| |||||||| | ||||| Sbjct 38 AAGATACCTTCAACACATGCAAATGCTAGCAATC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461399311756000