Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq172082 246 3e-60 >seq172082 Length=56793 Score = 246 bits (272), Expect = 3e-60 Identities = 509/751 (68%), Gaps = 11/751 (1%) Strand=Plus/Plus Query 13979 AAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTA 14038 || ||| ||||||||||| ||| |||| ||| || | ||| | | || | | Sbjct 14622 AACTCATATGGATTTGTTATCATCTTACCTTTCCCACCTCCAA-TTCAACCAACAAACGA 14680 Query 14039 TCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACA 14098 || || | ||||||||||||| ||||| || | |||||||||||| || | ||||| Sbjct 14681 TCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTACG 14740 Query 14099 GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTA 14158 || | || ||||| ||||| | ||| || || ||||| || || || | Sbjct 14741 GGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATGATT-TC--A 14797 Query 14159 ATAATTTCAT---TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 14215 |||||| || || |||| | | | | ||||||||| |||||| ||||||||| Sbjct 14798 ATAATTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAAATCA 14857 Query 14216 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAAT 14275 ||||| | |||||||| | || | ||| || || ||||| | || ||||| | Sbjct 14858 CAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGA 14917 Query 14276 CCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335 || ||||| || | ||||||||| | ||| || || ||||| || ||||| || Sbjct 14918 CCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGACA 14977 Query 14336 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14395 |||||||| || || | || || ||||| || ||| || ||||| | Sbjct 14978 GCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGACATG 15037 Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 ||||| || | || |||| | ||| ||||||||||||||||||| || ||| Sbjct 15038 GCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATATTCT 15097 Query 14456 TTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 | | | | ||| |||||| || ||||| | | ||||||||||| ||||||| Sbjct 15098 CGTTGATCACGATCCTT--AATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTA 15155 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||| || || || |||||||| ||||| | ||| |||| ||| |||||| Sbjct 15156 CATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTT 15215 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | | || | ||| | | ||||||||||||||||||||| ||| ||||| ||||||| Sbjct 15216 GGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCA 15275 Query 14634 ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693 | || | |||||| | | || | | | | ||| ||| ||| || | ||||| Sbjct 15276 GAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCCT 15335 Query 14694 TAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | || ||||| ||||| ||||| |||||||| Sbjct 15336 TGGAGAGATCAACTTCCTCAACGGTCCAAAA 15366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGT--CTTTGTTAGAAATAACGCCCATTT 13913 |||||||| |||| || | ||| |||||||| | ||| | |||| |||| || Sbjct 14435 TAAAAATCTGCATCCAATGTAAAGACATTATCTAAGCGATGT--GCTGTAACACCCAATT 14492 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||||| |||| | ||||||||| ||||||||||| ||||| ||||| ||| Sbjct 14493 TTTGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTACCATCCAGCGATATCATTT 14552 Query 13974 CCATAAAATCAAATGGATTT 13993 ||||||| || |||||| Sbjct 14553 CCATAAAGGGGAAGGGATTT 14572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481185197072800