Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq175891 127 2e-24 seq188148 105 5e-18 >seq175891 Length=10111 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || ||||||||||| ||||||||||| | || ||| | |||||| Sbjct 8983 TACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCATCTTC 8924 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || ||| |||| | | ||||||||| ||| | ||||| || || Sbjct 8923 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 8864 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| |||||| | | ||| || ||| ||||| ||| | |||||| | || Sbjct 8863 GATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATAGTCTT 8804 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || || ||||||||||||||||| Sbjct 8803 GCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||||| |||||||||||||||||||| |||| || || | ||| Sbjct 8301 AGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 8242 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || ||| | || | | ||||||||| ||| | || |||||||| Sbjct 8241 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCT 8182 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||| ||| || ||| || | ||||||| | Sbjct 8181 TGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTC 8122 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || || || ||||||||||| Sbjct 8121 TTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||| |||||||||||||| ||||| || | || ||| | ||||| Sbjct 8527 TACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTCTTC 8468 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||||||| ||| | || | | ||||||||| ||| | |||||||| || Sbjct 8467 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTGTCTTG 8408 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||| || ||||| || | |||||| ||| Sbjct 8407 AATTT-TAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 8349 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||||| || ||||| |||||||| Sbjct 8348 TGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||| || || | || ||| | ||||||| Sbjct 9210 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCC 9151 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || || || || || | || | | |||||| || ||| | ||||||||||| Sbjct 9150 AACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCCTGG 9091 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | | | ||| ||| ||||| ||| | |||||| |||| Sbjct 9090 ATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATAGTTTTT 9031 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| ||||| |||||||| Sbjct 9030 CCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||| || |||| || || | ||||||| Sbjct 9438 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCTTCC 9379 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || || || || || | || | | ||| ||||| || | ||||| ||||| | Sbjct 9378 AACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 9319 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | | ||| || ||| ||||| ||| | ||| ||| | ||| Sbjct 9318 ATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGTCTTG 9259 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || || || |||||||| Sbjct 9258 CCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || || || ||||| ||||| || |||| || || | |||||| Sbjct 9666 ACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCTTCC 9607 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || || | || | | ||||||||| || | ||||| ||||| Sbjct 9606 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 9547 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| | |||||| | | ||| || || ||||| ||| | ||||| | ||| Sbjct 9546 ATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGTCTTG 9487 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| ||||| || || |||||||| Sbjct 9486 CCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | ||| | |||||| || ||||||||||| |||||||| |||| | Sbjct 8772 CCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGAC 8713 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||||||| || || |||| | | |||||||| ||| Sbjct 8712 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGA 8653 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || |||| | || || || | | | | ||| || || || Sbjct 8652 ATACCTTCTTTGTCTTGGATTT-TGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAAC 8594 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| || || || ||||| || ||||||||||| Sbjct 8593 CTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 >seq188148 Length=18106 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 18114 AGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 ||||||| ||| ||||| ||||| ||||| ||||||||||||| || || || || Sbjct 3628 AGTACCAAATGTAAAGTG--GATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCAT 3685 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||||||||||| || || |||| | | ||||||||| ||| | ||||| || | Sbjct 3686 CTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGT 3745 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | |||| |||||| | | ||| ||||| |||||| ||| | ||| ||| Sbjct 3746 CTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGG 3805 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || || ||||| || || || ||||| Sbjct 3806 TTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378454208342700