Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq172082 244 1e-59 >seq172082 Length=56793 Score = 244 bits (270), Expect = 1e-59 Identities = 474/695 (68%), Gaps = 16/695 (2%) Strand=Plus/Plus Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 ||| || | |||||||||||||| ||||| || | |||||||||||| || | ||||| Sbjct 14680 ATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTAC 14739 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 || | || ||||| ||||| | ||| || || ||||| ||| ||| Sbjct 14740 GGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGA---AATGATTTC 14796 Query 13826 AATAATCTCAT---TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 |||||| || || |||| | | | | ||||||||| |||||| |||||||| Sbjct 14797 AATAATTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAAATC 14856 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 |||||| | |||||||| | || | ||| || || ||||| | || ||||| | Sbjct 14857 ACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAG 14916 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || ||||| || | ||||||||| | |||||| || ||||| || ||||| || Sbjct 14917 ACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGAC 14976 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || || | || || ||||| || ||| || ||||| | Sbjct 14977 AGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGACAT 15036 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| || | || |||| | ||| ||||||||||||||||||| |||||| Sbjct 15037 GGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATATTC 15096 Query 14123 CTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 | | | | ||| |||||| || ||||| | | ||||||||||| |||||| Sbjct 15097 TCGTTGATCACGATCCTT--AATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGT 15154 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC 14240 | |||||||| || || || |||||||| || || | ||| || | ||| || || Sbjct 15155 ACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCT 15214 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 | | || | ||| | | ||||||||||||||||||||| ||| ||||| |||||| Sbjct 15215 TGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCC 15274 Query 14301 AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGATAAA 14357 | | || | ||||| | || |||||||| | ||| ||| ||| || || | Sbjct 15275 AGAACGTGTGAAATAA---AATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTA 15331 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||||| || ||||| ||||| ||||| |||||||| Sbjct 15332 TCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAA 15366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGT--CTTTGTTAGAAATAACGCCCATTT 13581 |||||||| |||| |||| ||| |||||||| | ||| | |||| |||| || Sbjct 14435 TAAAAATCTGCATCCAATGTAAAGACATTATCTAAGCGATGT--GCTGTAACACCCAATT 14492 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||||| |||| | ||||||||| ||||||||||| ||||| ||||| ||| Sbjct 14493 TTTGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTACCATCCAGCGATATCATTT 14552 Query 13642 CCATAAAATCAAATGGATTT 13661 ||||||| || |||||| Sbjct 14553 CCATAAAGGGGAAGGGATTT 14572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573894364000