Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq172082 226 3e-54 >seq172082 Length=56793 Score = 226 bits (250), Expect = 3e-54 Identities = 502/747 (67%), Gaps = 17/747 (2%) Strand=Plus/Plus Query 13442 ATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAA 13501 ||||||||||| ||| |||| ||| || | ||| | || || | ||| || | Sbjct 14629 ATGGATTTGTTATCATCTTACCTTTCCCACCTCCAA-TTCAACCAACAAACGATCGGCCA 14687 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 |||||||||||||| ||||| || | |||||||||||| || | ||||| || | Sbjct 14688 CAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTACGGGTAGAG 14747 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621 || ||||| ||||| | ||| || || ||||| ||| || | |||||| Sbjct 14748 CATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGA---AATGATTTCAATAATTC 14804 Query 13622 CAT---TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAA 13678 || || |||| | | | | ||||||||| |||||| |||||||||||||| | Sbjct 14805 TATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAAATCACAATGTA 14864 Query 13679 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 13738 |||||||| | || | ||| || || ||||| | || ||||| | || |||| Sbjct 14865 AACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTT 14924 Query 13739 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 13798 | || | ||||||||| | ||| || || ||||| || ||||| || ||||||| Sbjct 14925 TCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGACAGCAGCAA 14984 Query 13799 ACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATT 13858 | || || | || || ||||| || ||| ||| ||||| | ||||| | Sbjct 14985 ATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGACATGGCCCAAT 15044 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTT 13918 | | || |||| | ||| ||||| || ||||| |||| || ||| | | Sbjct 15045 CGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATATTCTCGTTGAT 15104 Query 13919 TAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 13976 | | ||| |||||| || ||||| | | ||||||||||| ||||||| ||||| Sbjct 15105 CACGATCCTT--AATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTACATTTTC 15162 Query 13977 TATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAA 14036 || || || || |||||||| ||||| | ||| |||| ||| ||||| | | || Sbjct 15163 CATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTTGGGAGAA 15222 Query 14037 TCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14096 | ||| | | ||||||||||| |||||||| ||| ||||| ||||||| | || Sbjct 15223 ACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCAGAACGTG 15282 Query 14097 TTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGA 14153 | ||||| | || |||||||| | ||| ||| ||| || | |||||| || Sbjct 15283 TGAAATAA---AATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCCTTGGA 15339 Query 14154 AAGATCTACTTCATCAACTGTCCAAAA 14180 ||||| ||||| ||||| |||||||| Sbjct 15340 GAGATCAACTTCCTCAACGGTCCAAAA 15366 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGT--CTTTGTTAGAAATAACGCCCATTT 13369 |||||||| |||| |||| ||| |||||||| | ||| | |||| |||| || Sbjct 14435 TAAAAATCTGCATCCAATGTAAAGACATTATCTAAGCGATGT--GCTGTAACACCCAATT 14492 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||| | |||||| || ||||||||||| ||||| ||||| ||| Sbjct 14493 TTTGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTACCATCCAGCGATATCATTT 14552 Query 13430 CCATAAAATCGAATGGATTT 13449 ||||||| ||| |||||| Sbjct 14553 CCATAAAGGGGAAGGGATTT 14572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477437434994400