Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq172082 154 2e-32 seq191290 132 7e-26 seq173136 87.8 3e-12 >seq172082 Length=56793 Score = 154 bits (170), Expect = 2e-32 Identities = 480/729 (66%), Gaps = 38/729 (5%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| | || ||||||||||| || || || || ||||| |||||||| | || | Sbjct 15380 AGGCTGAAGCATCCTTTTGGACCGTTGAGGAAGTTGATCTCTCCAAGGATAATTCTGACT 15321 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||| | | | || || | ||| || | ||||| || ||| || |||| ||||||| Sbjct 15320 GGGAAA---GACTTACCGACAATGAACGTCATTTTATTTCACACGTTCTGGCATTCTTTG 15264 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| |||||||| || || || || |||| |||||| ||| ||||| |||||| || Sbjct 15263 CCGCTTCCGATGGTATAGTTAATGAAAATCTTGTTGA-ACGTTTCTCCCAAGAGGTGCAA 15205 Query 125217 ATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 | |||||| ||| || || || || |||||||| || || || || ||||| || Sbjct 15204 GTAACAGAGG-CTCGTTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCCGA 15146 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATC---CGCAACGTAAACACATGCT 125332 |||||| || | ||||||| |||||| |||| ||||| || | || Sbjct 15145 AATGTATAGTATTTTAATTGACACTTACATTAAGGATCGTGATCAACGAGAATA---TCT 15089 Query 125333 CTTTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGG---TGAT 125386 ||||| || || || || |||| || | ||| ||||| | |||| || Sbjct 15088 ATTTAATGCTATTGAAACTATGCCAGCTGT---TAAGCGTAAGGCCGATTGGGCCATGTC 15032 Query 125387 TCGG--TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCC 125444 | || | ||| | || | | | || || || | | | ||||| || || Sbjct 15031 TTGGATTTCATCTAAATCGGCTAATTTTGGT-----GAGCGTATTATTGCATTTGCTGCT 14977 Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || ||||| || ||||| ||||||||||| | || |||||||||||||| || || Sbjct 14976 GTCGAGGGTATTTTCTTCAGTGGTAGTTTTGCTTCGATATTTTGGCTCAAGAAACGTGGT 14917 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 || ||||| || || || | || || || || || || || ||||| |||| ||| Sbjct 14916 CTTATGCCTGGCCTTACATTCTCCAATGAATTGATCTCACGTGATGAGGGTTTACATTGT 14857 Query 125565 GACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAA 125624 || ||||| || || ||||| || || || || | || | | || ||| | Sbjct 14856 GATTTTGCTGTTTTAATGTTT---AAACATTTG-GTACAACGTCCTAGT--AGGGATAGA 14803 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 | | || | || | | || || || | || ||||| || || |||| || | Sbjct 14802 A---TTATTGAAATCATTTCGGAGGCGGTAAAAATTGAACAGGAATTCTTAACAGATGCT 14746 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 ||||| || | ||||||| ||||| || || | |||| || || || ||||||||| Sbjct 14745 CTACCCGTAAATTTGATTGGTATGAATTGTAAATTGATGTCGGAATATATTGAGTTTGTG 14686 Query 125745 GCAGATCGT 125753 || |||||| Sbjct 14685 GCCGATCGT 14677 >seq191290 Length=35329 Score = 132 bits (146), Expect = 7e-26 Identities = 377/574 (66%), Gaps = 4/574 (1%) Strand=Plus/Plus Query 69999 TACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACA 70058 |||| |||||| || || ||| ||| | |||||||| | || |||||||| Sbjct 6796 TACATATTTGGGATGGTAATAGTGATCGTAAATTTTTGGATAAATTAGGTTTCACCGAAC 6855 Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 | |||| || ||| |||| || ||||| || || || ||| | || | || |||| | Sbjct 6856 GTGAAGAAGGAGATTTGGGTCCGGTGTATGGTTTTCAATGGCGTCATTTTGGTGCCAAAT 6915 Query 70119 AT-GTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATT 70177 || | | | || | ||||| | | | ||||| ||||||||| | ||||| Sbjct 6916 ATCGCACA-TGTAATGATGACTACACCAATGAAGGTGTCGATCAATTGAAAGAGGTCATT 6974 Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCA 70237 | || | || ||||| | ||||| | || | |||| | |||||||||| Sbjct 6975 AATACCATACGCACTAATCCCAATGATAGACGCATAATTATGTCAGCTTGGAATCCTGTT 7034 Query 70238 GATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA- 70296 ||| | | |||||||| | ||||| |||||||||||||| || || || | | | | Sbjct 7035 GATATACCACAAATGGCTTTGCCACCTTGTCACTGTTTGGCACAATTCTA-TGTTGCTAA 7093 Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 ||| |||| || || | ||||| | ||||| || ||||| || |||||||| || Sbjct 7094 TGGTGAATTATCTTGTCAGCTATATCAACGTAGTGCTGATATGGGTCTTGGTGTACCATT 7153 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||| || || ||| || | | || | ||||||||||| || || | ||||| | | Sbjct 7154 TAATATAGCTTCTTATGCTTTACTAACCTATATGATTGCTCATATAACTGACCTGAGACC 7213 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 || || | || |||| ||| || | || || ||| ||||| || || || || Sbjct 7214 AGGAGATTTTATTCATACCACTGGTGATACACATGTTTATAAGAATCATATTGAACCTTT 7273 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGT 70536 ||||| ||| || ||||| | || | || ||||| || ||| | | ||||| Sbjct 7274 AAAGGAGCAGCTAAAACGGAAACCACGCCCCTTTCCTAAATTGGTTATAAAGAGAAAAGT 7333 Query 70537 TGAAAATATTGACAGTTTTAAGTACGAAGATTTT 70570 ||| |||| || ||| || | ||||||||| Sbjct 7334 CGAAGATATAGATGATTTCAAATTTGAAGATTTT 7367 >seq173136 Length=30018 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 || ||||| || ||||| ||| | ||||| || | ||||| ||||| | || Sbjct 3661 TATAAGACAGTTTGGGAAATTTCCGTCAAGAGCACAATTAAAATGGCCGCCGATCGTGGC 3720 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | ||| || || |||||||| || || | |||| || || || | ||| || Sbjct 3721 GCTTTCATAGATCAAAGTCAATCCTTTAACATACACGTAGCTGAACCTAATTACGGTAAA 3780 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | || || ||||| || || | ||||| ||| | ||||| |||||||||||| | Sbjct 3781 TTAACCTCTATACATTTCTATTCTTGGAAGGCTGGCTTAAAGACCGGCATGTACTATTTA 3840 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 |||||||| | ||| ||||||| |||| |||||| || || Sbjct 3841 AGAACAAAACCAGCCGCCAATGCTATACAATTTACTGTAGA 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739276396829600