Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq175891 143 2e-29 seq188148 120 2e-22 seq22680 120 2e-22 seq185055 104 2e-17 seq20636 104 2e-17 seq137448 86.0 5e-12 >seq175891 Length=10111 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | ||| || ||||| | ||||| |||||||| || |||||||| Sbjct 8546 TGCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAG 8487 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | ||||||| |||||||||||||| | |||||||||||||| || | Sbjct 8486 ACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGG 8427 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | |||||||| ||||| |||||| ||| |||||| |||| || |||||| | || Sbjct 8426 GGATTCCTTCCTTGTCTTGAATTTTAGCT-TTTACATTTTCAATAGTATCGGAAGGCTCA 8368 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || |||| || || ||||| ||||||||| Sbjct 8367 ACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATA 8317 Score = 134 bits (148), Expect = 1e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| ||||| |||||||| || |||||||| |||||||||||| | ||| || | Sbjct 8758 TAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGG--ACAATGTACGTCCA 8701 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| |||||| | || ||||| ||||| || ||||| ||||||||| Sbjct 8700 TCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 8641 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| || || ||||||| ||||| | ||| || |||| ||||| Sbjct 8640 TCTTGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATT 8581 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || | ||||| || ||||||||||| Sbjct 8580 GTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CG 15208 ||| ||||| |||||||| || |||||||| |||||||| || | ||| || | Sbjct 8986 TAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCG--ACAATGTACGGCCA 8929 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| ||||| | || ||||||||||| || ||||| ||||||||| Sbjct 8928 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTG 8869 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||| ||| || |||| |||||||| || || |||||||| || Sbjct 8868 TCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATA 8809 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || | ||| |||||||||||||||||| Sbjct 8808 GTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCATA 8773 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || || ||||| ||||| |||||| | | | | ||||| Sbjct 9669 AAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCT 9610 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | |||||||||||||| || ||||| |||||||| || Sbjct 9609 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 9550 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| |||| ||||||||| || || || || || || || Sbjct 9549 TGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGTC 9490 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || || ||||||||| Sbjct 9489 TTGCCGGTCAAGGTTTTGACGAAGATTTGCATA 9457 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || || ||||| ||||| |||||| | | | | | ||| Sbjct 9441 AAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCT 9382 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || || || ||| | ||||||||||| || || ||||| |||||||| || Sbjct 9381 TCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 9322 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| |||| |||||||| ||||| || ||||||||||| Sbjct 9321 TGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGTC 9262 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || || || ||||||||| Sbjct 9261 TTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 9229 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| |||||||| || || |||||||| |||||||||||| | | | | |||| Sbjct 8302 TAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTC 8243 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| |||||||| || || | |||||||||||||| || ||||| || || || || Sbjct 8242 TTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATC 8183 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || | || || ||||| | ||| || |||||||| ||||| Sbjct 8182 TTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGT 8123 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || | || || || || |||||||| || || Sbjct 8122 CTTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTTCGA 8084 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 ||||| || |||||||| || || ||||| ||||| ||||| | ||| || | | Sbjct 9213 AAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAG--ACAATGTACGTCCAT 9156 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || || || || ||| | ||||||||||||||||| ||||| ||||| || | Sbjct 9155 CTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTAT 9096 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||||| ||||||| | ||||| ||||| ||||| || ||||| || | Sbjct 9095 CCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATAG 9036 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| ||||| ||||| ||||||||| Sbjct 9035 TTTTTCCAGTCAAGGTTTTCACAAAGATTTGCATA 9001 >seq188148 Length=18106 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||||| || ||||| |||||||| ||| | | | | ||||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||||||||| || || || ||||||||||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| ||||| ||| | || || || ||||||||||||||| Sbjct 3751 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 3810 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||| || || || ||||| Sbjct 3811 CCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq22680 Length=2395 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| ||||| || | ||| | |||| || ||||| |||||||| ||| | Sbjct 775 CCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGTTA 834 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | ||||| || ||| ||||||| | ||||||||| || Sbjct 835 AGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAGGG 894 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || |||||| ||||| |||| || || || | |||| || Sbjct 895 ATTCCTTCTTTGTCTTGGATCTTTGCT-TTTACGTTTTCGATCGTGTCTGTGCTTTCGAC 953 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || ||||| || ||||| ||||| |||||||| Sbjct 954 CTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCAT 1001 >seq185055 Length=12631 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || ||||| |||||||| || ||| | | | || ||| Sbjct 12444 ACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCT 12503 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||||||||||||| | |||||||||||||| || ||||| |||||||| || Sbjct 12504 AATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCTTTATCTTGG 12563 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| ||||||||| ||| || || || || || ||||| Sbjct 12564 ATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTCGACTTCCAAAGTGATAGTTTTG 12623 Query 15335 CCTGTCA 15341 || |||| Sbjct 12624 CCGGTCA 12630 >seq20636 Length=14080 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 80241 AAACCTGAACAATTAGCCGAAGCGGGAtttttttACACCGGTTTTGGTGACAAAACAAAA 80300 ||||||| |||||| |||||||| || || ||||| |||||| ||||| ||| Sbjct 5502 AAACCTGCACAATTGGCCGAAGCTGGTTTCTTTTATACCGGTACAGGTGATCGCGTCAAA 5443 Query 80301 TGTTTCTATTGCGCCGGTGGTGTTTGGAACTGGGAATTAAATGATGACCCATGGGAACAG 80360 |||||| ||||| |||||| | | | ||||| |||||||||||| |||||||| Sbjct 5442 TGTTTCAGTTGCGGTGGTGGTCTAAAGGATTGGGATGAAAATGATGACCCCTGGGAACAA 5383 Query 80361 CACGCCATCTGGTTTGGGAATTGTACATATGTAAAAATAATAAAAGG 80407 ||||| || ||| | || || ||| ||||||||| || | || || Sbjct 5382 CACGCTATATGGATGGGTAAATGTCGTTATGTAAAATTAGTTAAGGG 5336 >seq137448 Length=735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| || || | ||| | || || || ||||| || || || || Sbjct 29 CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCATTT 88 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || | || || | || || || || ||||||| | ||| ||||| || Sbjct 89 AATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAGGT 148 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||| ||||||| | || || ||||| | ||| || Sbjct 149 ATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCCTTCAACT 208 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 209 TCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCAT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361329670204860