Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq175891 131 1e-25 seq5262 109 3e-19 >seq175891 Length=10111 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || || |||||||||||||| || |||||||| ||||||||||||||| Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | ||| |||||||| || ||| ||| || |||||||| || || | ||| Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| |||||| ||| ||| || ||| || | ||| Sbjct 8424 ATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACC 8365 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||| || || | || || || || |||||||| Sbjct 8364 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || || || | || || |||||||| || |||||||| ||||| | || Sbjct 8760 CGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCA 8701 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| || |||||||| || || || | ||| || |||||||| Sbjct 8700 TCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 8641 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || |||| ||| || || || Sbjct 8640 TCTTGGATTTTGGC---TTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTA 8584 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||||||||| | ||||| ||||||||||||||| Sbjct 8583 ATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 >seq5262 Length=11329 Score = 109 bits (120), Expect = 3e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| ||||||||||| || ||||| |||||||| ||||| | | | | Sbjct 3164 CGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACCA 3223 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || |||||| ||| |||||||||||||| || | || || || ||||| Sbjct 3224 TCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTTG 3283 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || ||| ||| || || |||| || || || || || Sbjct 3284 TCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGATG 3343 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || || || ||||| Sbjct 3344 GTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318029873269080