Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq175891 118 8e-22 seq137448 114 9e-21 seq150344 104 2e-17 seq188148 102 6e-17 seq22680 96.9 2e-15 >seq175891 Length=10111 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| | ||| |||||||||||||| ||||| ||| ||| | || Sbjct 8530 TAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTC 8471 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || ||||| ||||| ||||| || || | || | ||||| || || Sbjct 8470 TTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTGTC 8411 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | ||| |||||| | ||||| || || | || || || Sbjct 8410 TTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGT 8351 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || || ||||| ||||| |||||||| Sbjct 8350 TTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 114 bits (126), Expect = 9e-21 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||||||||||| || |||||| || || | || ||| Sbjct 8298 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCC 8239 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| ||||| ||||| || || | || | ||| || |||||| | Sbjct 8238 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 8179 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| |||||| | || || || || | || || || || Sbjct 8178 ATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTCTTG 8119 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCA-TGTCGAGTCTTTGTAA 44136 || ||||| |||||||| || ||||||| | |||||| | ||||| Sbjct 8118 CCAGTTAAGGTCTTCACGAAGATTTGCATTTTCGAGTTTCTGTAA 8074 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || || ||||| || ||||||||| || ||| |||| Sbjct 9441 AAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCT 9382 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || || || || ||||| |||||||| || |||| | ||||||||||||| Sbjct 9381 TCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 9322 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| | ||| ||||| | ||||| || || | ||||| || Sbjct 9321 TGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGTC 9262 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || ||||| || || |||||||| Sbjct 9261 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| || || || || ||| ||| |||| ||||||||||| || ||||| Sbjct 8964 TCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCATCTTCCAATTGTTTACCAGCAAAG 8905 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || | || | ||||||||| ||| ||||| ||||| | Sbjct 8904 ATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTT 8845 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | ||||| || || | || || || || |||||||||||||| ||| Sbjct 8844 TCAATGGTATCAGATGGCTCAACTTCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACA 8785 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 8784 AAAATTTGCAT 8774 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || ||| ||||| || ||||||||| || || | || Sbjct 9669 AAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCT 9610 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || || ||||| ||||| || || |||| | ||||||||||||| Sbjct 9609 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 9550 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| | ||| ||||| | ||||| || || | || || || Sbjct 9549 TGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGTC 9490 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || || || || |||||||| Sbjct 9489 TTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| || || |||||| ||| ||| |||| ||||||||||| || || || Sbjct 8736 TCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAG 8677 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | ||||||||| ||| ||||| ||| || | Sbjct 8676 ATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTT 8617 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | |||||| | || || || || | ||||||||||| || ||||| || || || Sbjct 8616 TCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACG 8557 Query 44111 AATATTTGCATG 44122 || ||||||||| Sbjct 8556 AAAATTTGCATG 8545 >seq137448 Length=735 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| ||| ||||| | ||||| || ||||| || || |||||||| || || Sbjct 28 ACCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCATT 87 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || | || || |||||||||||||| | ||||||||| |||| Sbjct 88 TAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAGG 147 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || |||||||| || ||||| || || | ||| ||||| || || || Sbjct 148 TATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCCTTCAAC 207 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 || | |||||||| || || || | || || ||||| |||||||| || Sbjct 208 TTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTTC 258 >seq150344 Length=698 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| ||| || || | ||||| || ||||| || || |||||||| || || Sbjct 566 ACCACCTCTCAGTCTCAATACAAGATGTAAGGTACTCTCCTTCTGTATATTATAGTCATT 625 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| || |||| || | || ||||||||||||||||| | ||||||||| |||| Sbjct 626 TAATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAAATATCAATCTTTGCTGGTCAGGAGG 685 Query 44014 TACACCTTCTTT 44025 || |||||||| Sbjct 686 TATCCCTTCTTT 697 >seq188148 Length=18106 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| || ||||| || || || ||| || ||| |||| ||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | ||||| || || | ||||| |||||| Sbjct 3751 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 3810 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || || || || ||||| Sbjct 3811 CCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq22680 Length=2395 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| ||||| |||| ||||| ||||| || ||||| || || || ||| | Sbjct 774 ACCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCG-T 832 Query 43954 TAATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 ||| | | | |||| || | ||||| ||||| |||||||| | ||| ||||| ||| Sbjct 833 TAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAG 892 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||| ||| || ||| ||| || | | | || |||| || | Sbjct 893 GGATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTGCTTTCGA 952 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 | || | | ||||| || || |||| || || ||||| |||||||| || Sbjct 953 CCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTTC 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353945431444080