Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq175891 122 7e-23 seq188148 98.7 8e-16 seq21005 96.9 3e-15 >seq175891 Length=10111 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | || |||||||| | ||| ||||||||||| || |||||||| | Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||||||||||||||||| ||| |||| | | |||||||| ||| Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| ||| || | ||| || |||| ||| || Sbjct 8424 ATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACC 8365 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||||||||| ||||| || |||||||| |||||||| Sbjct 8364 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| ||||||||||||||||| |||||||||||| || ||| |||||| Sbjct 8298 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCC 8239 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| | | |||||||| ||| | || || || || | Sbjct 8238 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 8179 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || ||| |||||| || | ||| ||||| ||| Sbjct 8178 ATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTCTTG 8119 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || || || || || || || ||||||||||| Sbjct 8118 CCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || || || || |||||||||||||| |||||||||||| || || |||| Sbjct 8757 AATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 8698 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || || | || | | ||||||||| ||| | ||||||||||| Sbjct 8697 TCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 8638 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | | | || ||| |||||| || | ||||| ||| Sbjct 8637 TGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTT 8578 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || || ||||| || ||||||||||| Sbjct 8577 TTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || || |||||||| ||||| ||||| |||||| || ||| ||| Sbjct 9442 CAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATC 9383 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || || || || |||| | | || ||||| || | |||||||| || Sbjct 9382 TTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATC 9323 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| || || | ||| | ||| || || ||||| ||||||||| Sbjct 9322 TTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGT 9263 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| || ||||| || |||||||| Sbjct 9262 CTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || || ||||| || ||||| ||||| |||||| || ||| || Sbjct 9670 CAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTC 9611 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || || |||| | | |||||||| || | |||||||| || Sbjct 9610 TTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATC 9551 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| || || | ||| | |||| || || ||||| || || || Sbjct 9550 TTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGT 9491 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||||| |||||||| || |||||||| Sbjct 9490 CTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || || || || |||||||||||||| |||||||| || || || |||| Sbjct 8985 AATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCATCT 8926 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || ||| | || | | |||||||| ||| | ||||||||||| Sbjct 8925 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCT 8866 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| || || | ||| | ||| || || ||| | ||| || || Sbjct 8865 TGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATAGTC 8806 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| || || || |||||||||||||| Sbjct 8805 TTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 >seq188148 Length=18106 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || ||||| ||||| |||||||| ||| || || | ||||||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | || | | |||||||| ||| | ||||||||||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||||| |||||||||||| Sbjct 3751 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 3810 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || |||||||| || || ||||| Sbjct 3811 CCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq21005 Length=2931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 23595 GCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGA 23654 || |||| |||||| || || ||| | ||||| ||||||||||| || ||| | Sbjct 1074 GCATGTTGTTCCCAGGGATCATCGTCGTCCTCCCAATCTTTGAGGCCACCCAAACAACTA 1133 Query 23655 AAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCT 23714 |||||| | || || || |||| | ||| | || ||||| ||||||| ||| || Sbjct 1134 AAACATATAACAGCATCCCCAGTGCCCCTATAAAAGAACCCGGCCTCAGCTAGTTGTTCA 1193 Query 23715 GGCTTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGT 23762 ||||||||||| ||||| |||||||| |||| || ||||||||| Sbjct 1194 GGCTTTTGTTTCAAACTTCGAGGCCAATCAGCAAATGTGTTTAAACGT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418603013641260