Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq172082 219 4e-52 seq151072 123 2e-23 >seq172082 Length=56793 Score = 219 bits (242), Expect = 4e-52 Identities = 486/722 (67%), Gaps = 8/722 (1%) Strand=Plus/Plus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | ||||| | || || |||||||| || || | ||| || | ||| ||| Sbjct 14663 AATTCAACCAACAAACGATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTC 14722 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || || || || ||||| || | ||| |||||||| || | | ||| || | || || Sbjct 14723 ATACCAATCAAATTTACGGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCC 14782 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACAT 13146 || || || || | ||| | || ||| | ||| | | | | ||| |||||||| Sbjct 14783 TCCGAAATGATTTCAATAATT-CTATCCCTACTAGGACGTTGTACCAAATGTTTAAACAT 14841 Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 | | ||||||||||| || || || ||||| | || | || || || ||||| Sbjct 14842 TAAAACAGCAAAATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGT 14901 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC--Gaa 13264 || || |||||||| || ||||| || | ||||||||| | |||||| ||| ||| Sbjct 14902 AAGGCCAGGCATAAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAA 14961 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324 |||||| || || || || ||||| || || | | |||||| | || |||| Sbjct 14962 GAAAATA--CCCTCGACAGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTA 15019 Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTAT 13383 ||||| ||||||| | || || | ||||| || | |||| |||| || Sbjct 15020 GATGAAATCCAAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGG-CATAGTTTCAAT 15078 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 || ||||||| ||| | | || | || || ||| ||||| || || || | || Sbjct 15079 AGCATTAAATAGATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACT 15138 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 ||||||||| || || | ||||||||| || |||||||||||||| ||||| | |||||| Sbjct 15139 ATACATTTCGGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTC 15198 Query 13504 TGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACT 13563 || ||| || || || | | || | ||| | | ||||| |||||||| || || Sbjct 15199 TGTTACTTGCACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGA 15258 Query 13564 AGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAA 13623 ||| ||||| || || || | ||| |||||| | ||| || || | | || Sbjct 15259 AGCGGCAAAGAATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTC 15318 Query 13624 CCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGC 13683 ||| || | | ||| || || | ||| || ||||||||||||||||| || || |||| Sbjct 15319 CCAGTCAGAATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTTCAGC 15378 Query 13684 CT 13685 || Sbjct 15379 CT 15380 >seq151072 Length=631 Score = 123 bits (136), Expect = 2e-23 Identities = 221/316 (70%), Gaps = 9/316 (3%) Strand=Plus/Minus Query 12992 ACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATA 13051 ||| |||| || |||| ||| ||| ||||||||||||| || | || |||| | Sbjct 311 ACATACTCAATATACTCACACATCAAAGCACAGTTCATTCCAATCATAGCAACTGGCA-A 253 Query 13052 GCT-TCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTAC 13110 ||| || || ||||| | ||| || || ||||||||||| | || || || |||| | Sbjct 252 GCTATCAGTCAAAAACTCTTTCTCAATCTCAACTGCTTCACTTACAATTCCTTTTATATC 193 Query 13111 GTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAA 13170 | || || | | | | | ||||| | | || ||| ||||| ||||| |||| Sbjct 192 ATCATCACATCTAT--TCTCACACATGCTGTATAA-CAAACAAGCAAACTCACAATGCAT 136 Query 13171 TCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGT 13228 ||||| ||||| |||||| || || || || || ||||| ||||| | || | Sbjct 135 GCCTTCGTCTCTTGATATTAGTTCATTGCTGTAA--GTCAGACCTGGCATTAAGTTTCTT 78 Query 13229 TTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCA 13288 || || | |||||| ||||||||||| ||||| |||||| || |||||||| |||| Sbjct 77 TTCTTCAACCAAAAGATAGCAGCAAATGAACCACTAAAAAAGATACCTTCAACACATGCA 18 Query 13289 AACGCTATCAACCTTT 13304 || |||| ||| |||| Sbjct 17 AATGCTAGCAATCTTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429971484988920