Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5262 201 3e-46 seq175891 158 3e-33 seq137448 156 1e-32 seq22680 136 9e-27 seq185055 118 2e-21 seq172035 102 2e-16 seq150344 100 7e-16 seq151072 98.7 2e-15 >seq5262 Length=11329 Score = 201 bits (222), Expect = 3e-46 Identities = 167/204 (82%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| ||||| || |||||||| |||||||| ||||| | ||| ||||| | ||| Sbjct 3176 TGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACCATCTTCCAACTGT 3235 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 |||||||||||||||| | || ||||| || || ||||| ||||| ||||||||||| Sbjct 3236 TTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTTGTCCTGAATCTTG 3295 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| |||||| ||||| ||||| || |||||||| || Sbjct 3296 GCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGATGGTCTTACCCGTT 3355 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||||||||||||| Sbjct 3356 AGGGTTTTAACAAATATCTGCATT 3379 >seq175891 Length=10111 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| ||||| |||||||| |||||||| || ||||| | || | |||||||| Sbjct 8527 TACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTCTTC 8468 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||||||||| | | |||||||| || || |||||||| || || || Sbjct 8467 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTGTCTTG 8408 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || |||||||||||||| | |||||| ||| || ||||| | || || || || Sbjct 8407 AATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTT 8348 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || ||||| Sbjct 8347 GCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| || | ||||||||||| || || || || || || | || | || ||||| Sbjct 8755 TACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTC 8696 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||| || |||| | ||||||||| || || || |||||||| || || Sbjct 8695 CAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 8636 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || ||||| || ||||||| ||||| |||||| |||||||||||||| || || Sbjct 8635 GATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTTTT 8576 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || || ||||| Sbjct 8575 TCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | |||||||||||| ||||| || || || || | ||| | |||||| Sbjct 8301 AGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 8242 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || |||||||| | | |||||||| || || || || || ||||| Sbjct 8241 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCT 8182 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || || || | ||||| |||||| ||||||| || || ||| Sbjct 8181 TGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTC 8122 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | || || || || || |||||||| Sbjct 8121 TTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || ||||| || || | ||| | |||||||| | |||||| ||| Sbjct 9654 GTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCA 9595 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | |||||||| ||||| || ||||||||||| || || ||||| || Sbjct 9594 GCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATTTTTGCCTTG 9535 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||||| || || || || | || |||||||| || || | ||| Sbjct 9534 ACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGTCTTGCCGGTCAAGGTT 9475 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 9474 TTGACGAAGATTTGCAT 9458 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| || | ||||||||||| || || || ||||| || | || | || ||||| Sbjct 8983 TACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCATCTTC 8924 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| |||||||| |||| | |||||||| || || || |||||||| || || Sbjct 8923 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTG 8864 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || || || || ||||| | |||||| || || || |||| || |||||||| Sbjct 8863 GATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATAGTCTT 8804 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||| || ||||| Sbjct 8803 GCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || ||||| || || | ||| | || ||||| | || || || Sbjct 9426 GTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCTTCCAACTGCTTACCG 9367 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | || ||||| ||||| || ||||||||||| ||||| || || || Sbjct 9366 GCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTG 9307 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || ||||| || | ||||| ||||| || || | || Sbjct 9306 ACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGTCTTGCCGGTCAAGGTC 9247 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 9246 TTGACGAAGATTTGCAT 9230 >seq137448 Length=735 Score = 156 bits (172), Expect = 1e-32 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 104322 CTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381 ||||||||| || ||||| || || | || |||||||| ||| || ||||| |||| Sbjct 20 CTTTATTTA--CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATAT 77 Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 |||||||| || || || || || || || || || || ||||| || | || || | Sbjct 78 TATAGTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCT 137 Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 | ||||||||||| |||||||| ||||| || || || |||||||| || | ||||| | Sbjct 138 GGTCAGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCAC 197 Query 104502 TAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 ||| || || | |||||| ||||| || || |||||||| ||||| || ||||||| Sbjct 198 CCCCTTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTT 257 >seq22680 Length=2395 Score = 136 bits (150), Expect = 9e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| | || ||||| || || ||||| |||||||| || ||| || || || || Sbjct 766 TTCTTTTTACCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTG 825 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || || || || || || || ||||| || || || || | || ||||| Sbjct 826 TAGTCGTTAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGG 885 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || ||||| ||||||||||| || || |||||||||||||| ||||| | || || | Sbjct 886 TCTGGAGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTG 945 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 ||| ||||| | | || ||||| || || |||||||| ||||| || ||||||| Sbjct 946 CTTTCGACCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTT 1003 >seq185055 Length=12631 Score = 118 bits (130), Expect = 2e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| ||||| | || || |||| |||||| ||| Sbjct 12456 GTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCTAATTGTTTGCCA 12515 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||| || || || ||||||||||| || ||||| || || Sbjct 12516 GCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCTTA 12575 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||||| | ||||||| ||||| || || | || ||||| || || || Sbjct 12576 ACATTTTCAATGGTATCGGATGGTTCGACTTCCAAAGTGATAGTTTTGCCGGT 12628 >seq172035 Length=46076 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 ||||| ||| |||||||||| || || || ||| |||||| || ||||||||| Sbjct 18918 ACTCATGATGATTTATGGAATTCGGCACAAATTCAATTGGTAAAGGAGGGGAAAATGCAT 18859 Query 238638 AGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAA 238697 | || ||||| |||||||||||||||||||| | ||||||||| |||||| | | Sbjct 18858 GGCTTTTTACGCATGTATTGGGCTAAAAAGATTTTAGAATGGACTGAATCTCCCGAACAG 18799 Query 238698 GCTCTTAG-ATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAA 238756 ||| |||| |||| |||| || |||||||| || | || |||| ||||| || Sbjct 18798 GCT-TTAGAATATGCCATTTTACTTAACGATAAGTATAGTTTGGATGGTAGAGATCCCAA 18740 Query 238757 CGGATACGTAGGT 238769 || || || ||| Sbjct 18739 TGGTTATGTGGGT 18727 >seq150344 Length=698 Score = 100 bits (110), Expect = 7e-16 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 104322 CTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381 ||||||||| || ||||| || || | ||| |||||||| ||| || ||||| |||| Sbjct 558 CTTTATTTA--CCACCTCTCAGTCTCAATACAAGATGTAAGGTACTCTCCTTCTGTATAT 615 Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 |||||||| || || | || ||||| || || ||||| ||||| || | || || | Sbjct 616 TATAGTCATTTAATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAAATATCAATCTTTGCT 675 Query 104442 GATCAGGAGGTATTCCTTCTTT 104463 | ||||||||||| |||||||| Sbjct 676 GGTCAGGAGGTATCCCTTCTTT 697 >seq151072 Length=631 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 269130 AAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTA 269189 |||| || | || ||||| ||| |||||||| || ||| || || ||||| |||| Sbjct 2 AAAGATTGCTAGCATTTGCATGTGTTGAAGGTATCTTTTTTAGTGGTTCATTTGCTGCTA 61 Query 269190 TCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAA 269249 |||||||||||||||||||| | | |||||||| | |||| | || ||| | ||| Sbjct 62 TCTTTTGGTTGAAGAAAAGAAACTTAATGCCAGGTCTGACTTACAGCAATGAACTAATAT 121 Query 269250 GCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTAT 269291 || |||||||| | || || || || |||||||| |||| Sbjct 122 CAAGAGACGAAGGCATGCATTGTGAGTTTGCTTGTTTGTTAT 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148559173881680