Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq176725 100 3e-16 >seq176725 Length=8272 Score = 100 bits (110), Expect = 3e-16 Identities = 125/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 |||||||||||||| | |||||| || || || || || || |||||||| |||| Sbjct 2932 ATGCGTTCGCATATCAACTGAGCAATTCTATCACCACGTTTGACTTCAAAGTCT-TGTT- 2989 Query 5375 CCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAG 5432 | || ||| || || || || || | ||| || ||||| ||||| |||||||| |||| Sbjct 2990 CGGAGTGGTTGAATAGTACGACTCCTAAATTACCACGGTAATCTTCATCGATAACACCAG 3049 Query 5433 CGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTA 5480 | || || || ||||||| || || || | || ||||||||||||| Sbjct 3050 CTCCAACATCAATAAAGTTCTTAACAGCCAACCCAGAACGTGGTGCTA 3097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446673224475200