Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq175891 89.7 4e-13 seq188148 82.4 6e-11 >seq175891 Length=10111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||| || |||||||| ||||| ||||||| |||| || | || Sbjct 9213 AAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCATCT 9154 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||||||| || |||| ||||| || || || || | || |||||| ||| Sbjct 9153 TCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCC 9094 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||| ||| | | | |||| ||||| | | ||| || | || || ||| Sbjct 9093 TGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATAGTT 9034 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||||||||||| || ||||| Sbjct 9033 TTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||| ||||| ||||| || || ||||| ||||||||||| | Sbjct 8773 ACCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGA 8714 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || |||| || ||||| || | ||||||||||| ||||| || Sbjct 8713 CAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGG 8654 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | || ||| ||||| ||||| |||| | ||| |||| ||||| | || | Sbjct 8653 AATACCTTCTTTGTCTTGGATTTT-GGCTTTA---ACGTTTTCTATAGTATCCGAAGGTT 8598 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | ||| || ||||| || || | ||||| || ||||| ||||| Sbjct 8597 CAACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 >seq188148 Length=18106 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| | ||| |||||||| |||||||| || | ||| || | || ||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || |||||| || | || ||||| || ||||| || | || ||| ||||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | ||||| |||| || ||| || | || ||||||||| Sbjct 3751 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 3810 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | |||||| || || ||||||||| Sbjct 3811 CCAGTTAAAGTTTTGACGAAGATCTGCATC 3840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420263110552460