Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq191290 226 3e-54 seq172821 185 1e-41 seq9535 89.7 6e-13 seq50988 87.8 2e-12 >seq191290 Length=35329 Score = 226 bits (250), Expect = 3e-54 Identities = 530/788 (67%), Gaps = 35/788 (4%) Strand=Plus/Minus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||||| ||| |||||||| | | |||||||||||||||||| |||||| || || || Sbjct 7394 TGGATAAGGTTTATAATCGACAATTTCAAAATCTTCAAATTTGAAATCATCTATATCTTC 7335 Query 6759 AGACtttttttttAATA------TTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTG 6812 ||||||| | || ||| ||| | ||| | | ||| || ||| || Sbjct 7334 -GACTTTTCTCTTTATAACCAATTTAGGAAAGGGGCGTGGTTTC-----CGTTTTAGCTG 7281 Query 6813 TTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAA 6872 || |||| || || ||||||| ||||| ||| | ||| || ||||||||||| Sbjct 7280 CTCCTTTAAAGGTTCAATATGATTCTTATAAACATGTGTATCACCAGTGGTATGAATAAA 7221 Query 6873 TTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGC 6932 || |||||| ||| ||| |||||||| | ||| |||| ||| ||||||||||| Sbjct 7220 ATCTCCTGGTCTCAGGTCAGTTATATGAGCAATCATATAGGTTAGTAAAGCATAAGAAGC 7161 Query 6933 TACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 || |||||| |||||||| | |||||||| || | |||||| ||||||||||| Sbjct 7160 TATATTAAATGGTACACCAAGACCCATATCAGCACTACGTTGATATAGCTGACAAGATAA 7101 Query 6993 ---AATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAACAGCCT 7048 | ||| | | |||| ||||| ||| ||| ||||| || || ||| | | Sbjct 7100 TTCACCATTAGC---AACATAGAATTGTGCCAA-ACAGTGACAAGGTGGCAAAGCCATTT 7045 Query 7049 GATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTT 7108 | ||||||| ||||||||||| | ||| | || ||||||||||| ||||| || Sbjct 7044 GTGGTATATCAACAGGATTCCAAGCTGACATAATTATGCGTCTATCATTGGGATTAGTGC 6985 Query 7109 TTAATTTTGTTATAATTA---TTTGTAATTGATCTATACCCTGACCTTCATAATTAGTAT 7165 || | || |||| | || |||||||| | ||| | | || | | || Sbjct 6984 GTA---TGGTATTAATGACCTCTTTCAATTGATCGACACCTTCATTGGTGTAGTCATCAT 6928 Query 7166 GACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAAT 7225 ||| | ||| || || |||||||| | ||||||||| ||||| | ||||| |||| Sbjct 6927 TACATGTGCGATATTTGGCACCAAAATGACGCCATTGAAAACCATACACCGGACCCAAAT 6868 Query 7226 CACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGAT--CCATAAGC 7283 | ||||||||||| | | || |||||| || ||| | || ||| | || | | Sbjct 6867 CTCCTTCTTCACGTTCGGTGAAACCTAATTTATCCAAA--AATTTACGATCACTATTACC 6810 Query 7284 ATCCCAAATATGTACAGAttt-ttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGA 7342 |||||||||||||| | ||| | ||| | |||| | || || | || | | | Sbjct 6809 ATCCCAAATATGTATATTTTTCTCTTGCAATATTT-TGGCATCAGTGCAACCATGTACAA 6751 Query 7343 ACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGA 7402 |||| ||||| || || ||| | | |||||||| | || |||||| || || ||||| | Sbjct 6750 ACCACAAAAGCTCCTCAGCTACTGCCCGCCAAAATACTCGTTTTGTGGTTAACAAAGGAA 6691 Query 7403 ATG---TACTTAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAG 7459 ||| ||| | |||| | | | || |||||| | ||| | |||||| |||| Sbjct 6690 ATGAATTACGCATATCAAAACGCATTTGAGCACCAAAAATTGATACAGTACCCACACCAG 6631 Query 7460 TTCTATCA 7467 | | |||| Sbjct 6630 TACGATCA 6623 >seq172821 Length=17278 Score = 185 bits (204), Expect = 1e-41 Identities = 278/395 (70%), Gaps = 20/395 (5%) Strand=Plus/Plus Query 164723 TACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT------- 164775 |||| |||| | |||||||| || |||||| |||||||| |||||||| | Sbjct 3917 TACACATTATCATCTTTGATGAAATCGATGCTATTTGCAAACAACGTGGTTCTGTGGCTG 3976 Query 164776 -----AATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAG 164830 | | | |||||||| | || |||||||| ||| | | ||||| |||||||||| Sbjct 3977 GCAACAGTGGTGTTCATGATACCGTTGTTAATCAATTGTTAGCCAAAATCGATGGTGTAG 4036 Query 164831 AATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 || || ||||| |||||| || | |||||||| || |||| |||| | |||||||| | Sbjct 4037 AACAGTTGAATAACATTTTAGTTATTGGTATGACAAATCGACGTGATATGATTGATGACG 4096 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 | ||| |||| || ||||| || ||| | |||| ||||| | |||||| | || | | Sbjct 4097 CCTTACTACGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACAGG 4156 Query 164951 GACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTG----TGATATATTA 165006 | || | |||||||| || ||||| || ||| ||| | || | ||| | | Sbjct 4157 GTCGTGTGCAAATTTTGAATATTCAT---ACT-AAACGAATGCGTGAATTTAATAAAATT 4212 Query 165007 TCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAA 165066 ||| |||||||||| || |||| ||||| |||||||| | ||| ||||||||| Sbjct 4213 GCTCAAGATGTAGATTGCAAAGAAATTGCTGCTCTTACTAAAAACTTTAGCGGTGCTGAA 4272 Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 || || || || ||| | ||||| || || || || Sbjct 4273 TTGGAAGGTTTGGTACGTGCCGCCCAGTCTACAGC 4307 Score = 159 bits (176), Expect = 4e-34 Identities = 226/315 (72%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| | |||||||| | || || ||||| ||||| | ||||| | Sbjct 3521 ATTGGGATTTCGGTAAAATGGGAATTGGCGGTTTAGATAAGGAATTCAATGCCATTTTTA 3580 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || ||||||||||||| | | ||| || | | || ||||||| || |||| Sbjct 3581 GAAGAGCATTTGCTTCGCGTGTTTTCCCTCCTGAGTTGGTGGAACAATTAGGTTGCAAAC 3640 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | | ||||| ||||||||| |||| || || ||| |||||||| |||||||||||| Sbjct 3641 ACGTCAAAGGTATTTTATTATATGGTCCACCCGGTACTGGTAAAACTTTAATGGCTCGAC 3700 Query 164573 GCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| | || | |||||| | || || ||| ||||||||||||||| || | | Sbjct 3701 AAATTGGT-AATATGTTAAATGCCAGGGAACC--TAAGATTGTTAATGGTCCTCAAATTT 3757 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||||||||| |||||||| ||| ||||| |||||| || ||||| | Sbjct 3758 TGGATAAATATGTAGGTGAATCAGAAGCCAATATTAGACGTTTGTTTGCTGAAGCTGAGG 3817 Query 164690 AAGAACAAAAGAAAG 164704 ||||| | |||| || Sbjct 3818 AAGAAGAGAAGAGAG 3832 >seq9535 Length=25007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| || || |||||||||||| | | ||||| || || |||||||| Sbjct 24080 ATACCACAAATTGGCGACAAGTTTGCTTCTCGTCACGGACAAAAGGGTACCTGTGGTATT 24139 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||| || ||||||||| | ||||| || ||| ||| || ||| |||||||| Sbjct 24140 CAGTATCGCCAGGAAGATATGGCATTTACATGTGAAGGTTTAGCTCCCGATATTATTATT 24199 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || ||| ||||| ||| ||||| Sbjct 24200 AATCCTCACGCTATTCCATCTCGTATGAC 24228 >seq50988 Length=7354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 164653 GAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTA 164712 |||| ||| | ||||| | ||| | || || ||||| || | || || |||| | Sbjct 1 GAAGAGAATATAAGAAATCTATTTAAAGACGCAGAAGATGAGTATAAAAAGAGAGGTGCA 60 Query 164713 GCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT 164772 | | ||||||| |||| | ||||| ||| |||||||| ||| | | || | ||| Sbjct 61 AGTTCTGCATTACATATTATCATCTTTGACGAGTTAGATGCTGTTTTTAGACAAAGAGGT 120 Query 164773 --GA----TAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGT 164826 || ||| | | || ||| || || ||||| || ||| || || |||||| Sbjct 121 ACGAGCAGTAACAATGTTGGTGACCAGGTTGTAAATCAATTACTTAGCAAGATGGATGGT 180 Query 164827 GTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGAT 164886 |||||| | ||| |||||||| | || |||| ||||| || || ||| | ||||| Sbjct 181 GTAGAAGCATTAGATAATATTCTTGTTATAGGAATGACAAATAGAAAGGATCTGATTGAC 240 Query 164887 GATGC-TTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGA 164942 |||| || ||| ||||||| |||| || || | ||||||||| ||||| || Sbjct 241 AATGCACTTCTTA-GACCTGGCAGATTCGAGATGCATATAGAAATAATGTTACCTGA 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594438480936000