Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq36605 129 3e-25 seq188757 127 1e-24 seq32094 127 1e-24 seq23288 125 4e-24 seq1285 122 5e-23 seq5248 118 6e-22 seq171885 116 2e-21 seq67447 114 7e-21 seq190170 113 2e-20 seq172179 111 8e-20 seq7140 111 8e-20 seq180894 109 3e-19 seq188650 107 1e-18 seq37515 93.3 2e-14 >seq36605 Length=2540 Score = 129 bits (142), Expect = 3e-25 Identities = 87/97 (90%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| ||||||||||||| || |||||||||| |||||||||| ||||||||||||| Sbjct 685 ATATAATTAATAAAAAA--AATTTGGCCCATGGTGGGATCGAACCCGCGACCTTCGCGTT 742 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 743 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 779 Score = 127 bits (140), Expect = 1e-24 Identities = 83/91 (91%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| |||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 266 TAATAAAAAACTCAAGTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 325 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 326 ACGACGCTCTAACCAACTGAGCTAATGGGCC 356 >seq188757 Length=17620 Score = 127 bits (140), Expect = 1e-24 Identities = 89/101 (88%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| ||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 13822 AAAAATATAAT-AATAAAAAAGTTGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 13764 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 13763 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 13723 >seq32094 Length=1377 Score = 127 bits (140), Expect = 1e-24 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| ||||||||||||| || |||||||||| |||||||||| ||||||||||||| Sbjct 673 ATATAATTAATAAAAAAAAAATTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTT 732 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| | |||||||||||||||||| Sbjct 733 ATTAGCACGACGCTCTAAGCAACTGAGCTAATGGGCC 769 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||||| | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 262 TAATAAAAAATTTTAGTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 321 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 322 ACGACGCTCTAACCAACTGAGCTAATGGGCC 352 >seq23288 Length=8175 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| |||||||||||| |||||||||| ||||||||||||||||||| Sbjct 5273 TTAAAAAAAAATGTGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 5214 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 5213 ACGACGCTCTAACCAACTGAGCTAATGGGCC 5183 >seq1285 Length=5054 Score = 122 bits (134), Expect = 5e-23 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||||| | || ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 4297 TTATTAAAATAATAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 4238 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 4237 ACGACGCTCTAACCAACTGAGCTAATGGGCC 4207 Score = 116 bits (128), Expect = 2e-21 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 4559 AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4618 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||| || Sbjct 4619 CAACTGAGCTAATGGGCCTTC 4639 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2174 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2115 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 2114 CTGAGCTAATGGGCC 2100 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3533 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3474 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 3473 CTGAGCTAATGGGCC 3459 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3091 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3032 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3031 TGAGCTAATGGGCC 3018 >seq5248 Length=4836 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1242 AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 1301 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 1302 AACTGAGCTAATGGGCC 1318 >seq171885 Length=54005 Score = 116 bits (128), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| |||| ||||||| || | ||||||||| |||||||||| ||||||||| Sbjct 44299 AAATA-AGAAA-AATAAAATATACAGATGGCCCATGGGGGGATCGAACCCGCGACCTTCG 44242 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| ||||||||||||||||||||| Sbjct 44241 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 44200 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 42585 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 42526 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 42525 CTGAGCTAATGGGCC 42511 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 43369 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 43310 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 43309 TGAGCTAATGGGCCG 43295 >seq67447 Length=662 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 323 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 264 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 263 CTGAGCTAATGGGCC 249 Score = 82.4 bits (90), Expect = 4e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 606 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 662 >seq190170 Length=4497 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 379 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 320 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 319 TGAGCTAATGGGCC 306 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3409 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3350 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3349 TGAGCTAATGGGCC 3336 Score = 89.7 bits (98), Expect = 3e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4497 AACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4442 >seq172179 Length=27047 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17658 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17599 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 17598 TGAGCTAATGGGCCG 17584 >seq7140 Length=13156 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 652 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 593 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 592 CTGAGCTAATGGGCC 578 >seq180894 Length=11923 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2236 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2177 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2176 TGAGCTAATGGGCC 2163 >seq188650 Length=14188 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||| || ||| |||||||||| ||||||||||||||||||||||||| Sbjct 6339 AAAATAAACGTTGGTCCGTGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 6398 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 6399 CTCTAACCAACTGAGCTAATGGGCC 6423 >seq37515 Length=1297 Score = 93.3 bits (102), Expect = 2e-14 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 573 AACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 516 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260877844606960