Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5262 129 5e-25 seq188148 127 2e-24 seq175891 127 2e-24 seq22680 113 4e-20 seq137448 104 2e-17 seq185055 82.4 7e-11 >seq5262 Length=11329 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||||||||| || ||||||||||| | || || || | || || || Sbjct 3164 CGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAG--AAAGAGTACGAC 3221 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||||||||| |||| ||||| | |||||||||||| ||||| || |||| Sbjct 3222 CATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTT 3281 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || || || || | | || |||| | ||||| |||| |||| Sbjct 3282 TGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGA 3341 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || ||||| ||||| |||||||| Sbjct 3342 TGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 >seq188148 Length=18106 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || ||||| ||||||||||| | ||| || ||| || || || || ||| | Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACA-AG-GTACGACCATCTT 3688 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| ||| | ||||| || | ||| |||||||| || |||||||||||||| | Sbjct 3689 CCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTT 3748 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| |||||||| | | ||||| | | ||||| || | || ||||||| Sbjct 3749 GGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTT 3808 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | |||||| || ||||||||||| Sbjct 3809 TACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq175891 Length=10111 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||||||||| | |||||||||| || ||| | Sbjct 9444 CGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCA 9385 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || ||| | || || || | ||||||||||||||||||||||||||| Sbjct 9384 TCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTA 9325 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| |||||||| | | || |||| | || || || | || ||| Sbjct 9324 TCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATG 9265 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || || ||||| ||||| Sbjct 9264 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||||||||| | ||||||||| || || | Sbjct 9216 CGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCA 9157 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || ||| | || || || | ||| || ||||| ||||||||||| || Sbjct 9156 TCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTA 9097 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || | | ||| |||| | || || || | ||||| Sbjct 9096 TCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATA 9037 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| | |||||||||||||| ||||| Sbjct 9036 GTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | ||||| |||||||| | |||||||||| || |||| Sbjct 9672 CGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCG 9613 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | || || || | ||| ||||||||||||||||||||||| Sbjct 9612 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 9553 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||||||||| | | || || | | || || || | ||||| Sbjct 9552 TCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATA 9493 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||||| || ||||| ||||| Sbjct 9492 GTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | |||||||| ||||| | ||| || || || || | | Sbjct 8988 CGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCA 8929 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || |||||||||| | ||| |||||||| ||||||||||||||| Sbjct 8928 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTG 8869 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||||||| | | || |||| | || || || | ||||| Sbjct 8868 TCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATA 8809 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || ||||| || ||||| Sbjct 8808 GTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 104 bits (114), Expect = 2e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| | | || || || ||||| | |||||||| ||||| | Sbjct 8785 AAAAATTTGCATACCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGAT 8726 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| || || ||| |||| ||||| || | |||||||| | || Sbjct 8725 GTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTG 8666 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| ||||||||||||||||| | ||||| || || ||| | | ||| || Sbjct 8665 TTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTTTCTATAGTATC 8606 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || |||||||| || | ||||| || || || ||||| Sbjct 8605 CGAAGGTTCAACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Query 95008 GC 95009 || Sbjct 8545 GC 8544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | || || || ||||| ||||| || ||||| ||||| | Sbjct 8556 AAAATTTGCATGCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATA 8497 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || ||| || |||| ||||| || |||| || || | ||| Sbjct 8496 TTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGT 8437 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||| ||||| | |||||| || || || | | ||| || Sbjct 8436 TGATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCG 8377 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| ||||| | || || |||||||| ||||| Sbjct 8376 GAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 >seq22680 Length=2395 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | |||| || || || ||||||||| | ||| || ||| | Sbjct 775 CCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGTTA 834 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| |||||||| || | || || |||||||| || |||||||| Sbjct 835 AGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAGGG 894 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || ||||| || ||| ||| ||||| | | ||||| Sbjct 895 ATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTGCTTTCGACC 954 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | | || || ||||| || || ||||| |||||||| ||||| Sbjct 955 TCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCAT 1001 >seq137448 Length=735 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || |||||| | || |||||| ||||| || | ||||| || | Sbjct 29 CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCATTT 88 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || |||| || ||||||||||| || ||||| Sbjct 89 AATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAGGT 148 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||||| ||||| || | | || ||| | || || Sbjct 149 ATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCCTTCAACT 208 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || ||||| || || ||||| |||||||| ||||| Sbjct 209 TCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCAT 255 >seq185055 Length=12631 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||||||||||||| | ||| || || || ||| | |||||| Sbjct 12443 CACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTC 12502 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||| || | ||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 12503 TAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCTTTATCTTG 12562 Query 94918 AATTTTTGCCTTGAC 94932 || || ||||| || Sbjct 12563 GATCTTAGCCTTAAC 12577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447212723445600