Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq187216 168 1e-37 seq175745 168 1e-37 seq671 168 1e-37 seq178505 167 4e-37 seq173218 122 1e-23 >seq187216 Length=10674 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || ||||| |||||||| || |||||||||||||| Sbjct 3295 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATTACCAAGCCAGCTAT 3354 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| |||||||||| ||||| || || ||| | ||||| ||| | || ||||| | Sbjct 3355 TAGACGTTTGGCTCGTCGCGGTGGTGTAAAACGTATTTCTGGTTTGATTTACGAAGAAAC 3414 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||||||||| | || | | | |||||| | |||||| || ||| || || Sbjct 3415 CCGTGGTGTTTTGAAGGTATTTTTGGAAAACGTTATTCGTGATGCCGTCACCTACACTGA 3474 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || ||||||||| | |||||| | |||||||| ||||| | ||||| Sbjct 3475 ACATGCCAAGAGAAAAACTGTCACCGCTATGGATGTTGTCTATGCTTTGAAGAGACAAGG 3534 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 3535 TCGTACTTTGTACGGTTTCGGCGGTTAA 3562 >seq175745 Length=10012 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || ||||| |||||||| || |||||||||||||| Sbjct 7800 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATTACCAAGCCAGCTAT 7859 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| |||||||||| ||||| || || ||| | ||||| ||| | || ||||| | Sbjct 7860 TAGACGTTTGGCTCGTCGCGGTGGTGTAAAACGTATTTCTGGTTTGATTTACGAAGAAAC 7919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||||||||| | || | | | |||||| | |||||| || ||| || || Sbjct 7920 CCGTGGTGTTTTGAAGGTATTTTTGGAAAACGTTATTCGTGATGCCGTCACCTACACTGA 7979 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || ||||||||| | |||||| | |||||||| ||||| | ||||| Sbjct 7980 ACATGCCAAGAGAAAAACTGTCACCGCTATGGATGTTGTCTATGCTTTGAAGAGACAAGG 8039 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 8040 TCGTACTTTGTACGGTTTCGGCGGTTAA 8067 >seq671 Length=2242 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || ||||| |||||||| || |||||||||||||| Sbjct 30 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATTACCAAGCCAGCTAT 89 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| |||||||||| ||||| || || ||| | ||||| ||| | || ||||| | Sbjct 90 TAGACGTTTGGCTCGTCGCGGTGGTGTAAAACGTATTTCTGGTTTGATTTACGAAGAAAC 149 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||||||||| | || | | | |||||| | |||||| || ||| || || Sbjct 150 CCGTGGTGTTTTGAAGGTATTTTTGGAAAACGTTATTCGTGATGCCGTCACCTACACTGA 209 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || ||||||||| | |||||| | |||||||| ||||| | ||||| Sbjct 210 ACATGCCAAGAGAAAAACTGTCACCGCTATGGATGTTGTCTATGCTTTGAAGAGACAAGG 269 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 270 TCGTACTTTGTACGGTTTCGGCGGTTAA 297 >seq178505 Length=6709 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| |||||||| || ||||| |||||||| Sbjct 2602 GCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATTACCAAACCAGCTATT 2661 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||||||||| || || ||| | ||||| ||| | |||||||| | | Sbjct 2662 AGACGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCTGGTTTGATATATGAAGAAACT 2721 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | || | | | |||||| | |||||| || || || || Sbjct 2722 CGTGGTGTCTTGAAGGTATTTTTGGAAAACGTTATTCGTGATGCCGTCACATACACTGAA 2781 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || |||||| | |||||| | |||||||| ||||| | ||||| Sbjct 2782 CACGCCAAGAGGAAAACCGTCACCGCTATGGATGTTGTCTATGCTTTGAAGAGACAAGGT 2841 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 2842 CGTACTTTGTACGGTTTCGGCGGTTAA 2868 >seq173218 Length=28812 Score = 122 bits (134), Expect = 1e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||||| ||||||||||| || |||||||| ||||| || Sbjct 16408 GCAAAGCGTCATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAACCAGCCATA 16349 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || ||||||||||| ||||| ||| | || || || |||||||||| | | Sbjct 16348 CGTCGTTTAGCCCGTCGTGGTGGCGTCAAACGTATTTCGGGTTTAATCTATGAAGAAACT 16289 Query 16553 CGTGATGTTTTGAAG 16567 |||| |||||| ||| Sbjct 16288 CGTGGTGTTTTAAAG 16274 Score = 105 bits (116), Expect = 1e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 |||||| | ||||||| | |||||||| || ||||| ||||| ||||| ||| | || Sbjct 16191 CGTTATTCGTGATGCTGTTACTTATACCGAACATGCTAAGCGTAAAACTGTTACCGCTAT 16132 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| |||||||||||||||||||| |||| | || |||||||| ||||| Sbjct 16131 GGATGTCGTATATGCATTGAAACGTCAAGGACGTACTTTGTACGGTTTTGGTGGTTAA 16074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78899232474780