Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq187921 183 6e-42 seq191415 154 3e-33 seq190669 143 5e-30 seq188530 104 5e-18 seq192081 96.9 7e-16 seq191812 82.4 1e-11 >seq187921 Length=33419 Score = 183 bits (202), Expect = 6e-42 Identities = 395/586 (67%), Gaps = 6/586 (1%) Strand=Plus/Plus Query 7169 CTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATTACCACAAATCCATATT 7228 ||||| | || || ||| | || |||||| |||||| ||| |||| ||| ||||||| Sbjct 22876 CTTTCTG-TATCTTCCATTATTTAATTCATCATCTTTACATATAACCAAAAACCCATATT 22934 Query 7229 TAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTG-TATGGCATGTCCGTATTG 7284 | | |||||||| || || | ||| |||| || ||| ||| || || Sbjct 22935 TGTCCTTCCAACATTCCTGACAAATTTCT-TGAAACTTTTCATATCTCATATCACTACCA 22993 Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||||||||| || ||||| |||| ||||||||||||||| |||| | | | Sbjct 22994 ACATGATCATCGTAGATATGTTTCATATTCATTTCATCTTGCTTAAACATAATAATCATA 23053 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| || | | || || || |||| |||||||||||||| | ||| || Sbjct 23054 TTAGCATTATCCCTTACTAAATGTTTAGGAATTCTAGTATAAGTTTGACATAAATAAAAT 23113 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 |||||||| || |||| ||||| || ||| | | || | | ||||||||| Sbjct 23114 GAGTCAACATTTTTATGTCTTCCCATACAAAAATATGTACGTATATTGTTTTGTTTTTCA 23173 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 || |||||||| || |||||||| | |||||| || || || ||||| || ||| Sbjct 23174 CATGCAACATCATCGAATATCATAATTGAGTTATTTTTGGCTTCATCAGGAGGTATAACA 23233 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584 | |||| || || || | |||| || || | ||| || | ||| ||| Sbjct 23234 GAATCATTATCTGAAAACGTATAATATCCCATTCCTTTAATTGGTGATATTAGTTTCTGT 23293 Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644 | | | | ||| |||||||| | ||| || || || || | ||| || || ||||| | Sbjct 23294 AAGTATTCATATTTTGGTTGATAAAGTGATTTAGAATATAAATAGATGTTTTCAAATTTA 23353 Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704 | || || ||| | ||| | | | || | |||| ||||||||||| |||||||| Sbjct 23354 AGTCCATTAGGACTTTCAAGTAAACCAATCATAACATTAGTCTTTCCACAATTTGATGGT 23413 Query 7705 CCGCAAAACACTGCATGGATACTGTTGGGAAGTAAAGCACCGTGTC 7750 ||| || || |||| | || || || | ||||| || ||||| Sbjct 23414 CCGACAATCAGTGCACGAATTGAATTCGGTAATAAAGAACTGTGTC 23459 >seq191415 Length=23550 Score = 154 bits (170), Expect = 3e-33 Identities = 367/548 (67%), Gaps = 9/548 (2%) Strand=Plus/Minus Query 7165 AATCCTTTCCGATACCTACCACTCTTCAATTCACTGTCTTTATCTATTACCACAAATCCA 7224 || ||||| | ||||| |||| || | |||| ||||| || |||| ||| ||| Sbjct 17386 AAACCTTTTCTATACCGACCAGAATTAATTTCATCATCTTTGCTAATAACCAAAAAACCA 17327 Query 7225 TATTTAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGG-CATGTCCGT 7280 ||||| | |||||||| | || | || | ||| || |||| ||| || | Sbjct 17326 TATTTTTCCTTCCAACATTCTCTACAAATTTCACGAAATTTGTC-TATGCTCATATCACT 17268 Query 7281 ATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAG 7340 |||||||| | ||| |||| || ||||| | || || || |||| | | Sbjct 17267 TCCAACATGATCGTTATATATATTTTTTAGATTTAACTCGTCCTGTTTAAACATAATAAT 17208 Query 7341 AAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATA 7400 | || ||||| || | || || ||||| ||||| || |||||||||||||| | || Sbjct 17207 CATATTCGCATTGTCACGTATTAGATGCTTTGGTATACGAGTATAAGTTTGACATAAGTA 17148 Query 7401 GAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTT 7460 || ||| |||| || ||||| ||||| || ||| ||| | | || | || ||||| Sbjct 17147 AAATGAGTCTACATTTTTATGTCGCCCCATACAAAAATAAGATCTAATATTATTTTGTTT 17088 Query 7461 TTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGAT 7520 |||||| || || || || ||||||||||| || || | || || || || || Sbjct 17087 TTCACATGCTACGTCATCGAATATCATCAATGAATTCGATTTTATATTATCTGGTGATAT 17028 Query 7521 TACAGCTTCATGTTCGCTGAATGT-GAAGAATCCAATACCATCAATCTG-TTTAAGCAGT 7578 ||| || ||| ||| || || || | |||| | || ||| | | ||||| ||| Sbjct 17027 AACATCTCCATTTTCAGAAAAAGTATAATATTCCATTCCCTTCA--CAGATTTAATTAGT 16970 Query 7579 GTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCA 7638 ||| | | | ||| || ||||| | | || |||||||||||||||||||||| | Sbjct 16969 TTCTTTAAATATTCATATTTCGGTTGATATAATGATTTTGAGTAAAGATATATATTCTTA 16910 Query 7639 AACCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTT 7698 || | || || || ||| | | |||||| |||| | | || || ||||| |||||| Sbjct 16909 AATTTTAACCCATTAGGACTTTCTATAAGACTAAGCATAACGTTTGTTTTTCCGCAGTTT 16850 Query 7699 GATGGCCC 7706 ||||| || Sbjct 16849 GATGGTCC 16842 Score = 89.7 bits (98), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 4483 TATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAA 4542 || || || ||||||| || | | || ||||||||||| || ||| || | |||||| Sbjct 22936 TACGTAATACACTATAGAATTCTAAAGCAATGTTTAGAAAACGGATTAATTTTAAAGAAA 22877 Query 4543 ATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAAT 4602 | || | | || | ||| ||||||| ||||| ||| |||||| ||| |||| Sbjct 22876 GTGCATAGAATTCTGGAGTTTAAGCAATCTCCATGGCTTAAAAAATATATTGATTTAAAT 22817 Query 4603 ACCGCATGCCGAAAACTA--GCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGA 4660 || |||| | | ||| || || ||| || ||||| || |||| ||||||| | | Sbjct 22816 AC--AATGCATAGAGCTACTGCGAAAAATATATTTGAAAAGAATTTTTTTAAATTATTAA 22759 Query 4661 ATAATGCGGTTTTTGGAAAGACGATGGAGAATGTA 4695 |||| || | | |||||| || ||||| |||||| Sbjct 22758 ATAACGCCATATATGGAAAAACCATGGAAAATGTA 22724 >seq190669 Length=24143 Score = 143 bits (158), Expect = 5e-30 Identities = 249/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | || | || || || ||||| ||||| |||||||| | ||| || Sbjct 10147 TTGGCATTATCACGAACTAAATGTTTTGGAATTCGAGTATATGTTTGACATAAATAAAAT 10206 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 || | || ||||| |||||||| || ||| | | | || | || || || ||| Sbjct 10207 GAATCTATATTTTTGTGACGACCCATACAAAAATATGATCGTATATTATTTTGCTTCTCA 10266 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 || |||||||| ||||||||||| | || ||| ||||| ||||| || || ||| Sbjct 10267 CATGCAACATCATCAAATATCATAATAGAATTATTTTTAGCTTCTTCCGGTGGTATAACA 10326 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584 |||| || || ||||| || | || || || || |||| | ||| | ||| Sbjct 10327 CTATCATTATCACTAAATGTAAAATACCCCATTCCTGTTATAGGTTTCACAAGTTTTTCC 10386 Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644 | | ||| |||||| ||||| | || || || || || | ||||||||||||||| | Sbjct 10387 AAGTACTCATACTTGGGTTGATAGAGTGATTTAGAATATAAATATATATTCTCAAATTTT 10446 Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704 ||||| || ||| | | || | | |||| |||| ||||||||||| || || || Sbjct 10447 AAACCATTAGGACTTTCTATTAAACTAAGCATTACATTAGTCTTTCCACAATTCGAAGGG 10506 Query 7705 CC 7706 || Sbjct 10507 CC 10508 Score = 123 bits (136), Expect = 5e-24 Identities = 406/614 (66%), Gaps = 34/614 (6%) Strand=Plus/Plus Query 4327 GATGATGAG-AGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACA 4385 ||||| ||| |||| || || || | ||||| ||| || |||||||| | | |||| Sbjct 3616 GATGA-GAGCAGTGAGGGATATATATTAGAAGTGGATTTAGACTATCCTAATGAGCTACA 3674 Query 4386 TGATCTACACAAAGATCTACCTTTATGCCCAGAACATT---TTGTACCACCTGGTAGCAA 4442 ||| ||||| || |||||||| || || ||||| || || | || || | || Sbjct 3675 TGACCTACATAATGATCTACCATTTTGTCCAGATAATAAAATTATTCCTCCAATGA--AA 3732 Query 4443 GCAACAAAAACTCACGACA-ACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAA 4501 | | ||||| | | || ||| || |||| | || ||| ||||| |||| Sbjct 3733 G-AGGAAAAATTAATAGCAGACT-TGACTAATAAGAGAAAATATACAATTCATTATAGGG 3790 Query 4502 ATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAAT 4561 ||| || |||||||| || ||||||||| | |||||| |||| ||| | |||| Sbjct 3791 TTTTAAAGCAATGTTTGGAAAATGGTTTAGTTTTGAAGAAAGTACATAGAGTAATTAAAT 3850 Query 4562 TTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAA-AACTA 4620 || | ||| | ||| | ||| ||||||| ||| ||||| || || | ||||| Sbjct 3851 TTAAACAAGCTCCATGGTTGAAAACATATATAGATCTTAATAC---ATTCCATAGAACTA 3907 Query 4621 G--CTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 | | | ||| ||| |||||| | |||| ||| || | ||||| || |||| ||| | Sbjct 3908 GAGCGACAAATACGTTTGAAAAAGATTTTTTCAAACTATTAAATAACGCTGTTTATGGTA 3967 Query 4679 AGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAAGAACAAAGTGGCAA---- 4734 |||| ||||||||||| |||| ||| || |||||||| ||||||||| || Sbjct 3968 AGACCATGGAGAATGTGGAAAAAAGGAAAAATGTATATTTAGTTACAAAGTGGGAATCAG 4027 Query 4735 ----AGTCAA-TACAATGTATC-GGATTTAGTATGTAGACCA----AACTTCCACAGCCT 4784 ||| || |||| | | | || | | ||| ||| || ||||| ||| | Sbjct 4028 ATAGAGTAAACCACAAGGAAGCAAGAGCT--CACATAGCCCAACTTAATTTCCATAGCTT 4085 Query 4785 TACAATTTTTGATGAGGATATGGTTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTT-CA 4843 | | |||||||| |||||| || ||||||| |||||| || | | || | Sbjct 4086 GTCTAAATTTGATGACGATATGTTTGCTGTTGAAC-TAAAAAGATTAAACATAAATTGTA 4144 Query 4844 ACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACT 4903 | ||||| || || |||| || ||||| ||||| |||| ||| | || ||||| | Sbjct 4145 ATAAGCCAATGTACTTAGGATTCAGTATTTTAGAAGTATCAAAATGGAAAATGTATGATT 4204 Query 4904 TTCATTACAATTAT 4917 | || || | |||| Sbjct 4205 TCCACTATAGTTAT 4218 Score = 98.7 bits (108), Expect = 2e-16 Identities = 223/333 (67%), Gaps = 7/333 (2%) Strand=Plus/Plus Query 7929 AAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATC 7988 ||||| | || |||||| ||||| | | ||| | || || || | ||||| |||| Sbjct 10723 AAGGTATATTAAACAATTTAATCGATGTTTTACCAATAGAGCTACATCTGCCAGGATATC 10782 Query 7989 AGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAA 8048 | | || || || || || |||||| || | ||||| |||| || |||||| | Sbjct 10783 AATTTTGTGGACCAGGAACTAAGTTAAAAAAACGTTTAGCAAGAGGCGACAGAGGTATTA 10842 Query 8049 ATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATT 8108 |||| ||||||||||| |||| ||| || |||||||| || ||| ||| || || ||| Sbjct 10843 ATCCATTGGACGCTGCATGTAGGGATCATGATATAGCATATTCACAAA---GTAAAGATT 10899 Query 8109 TGGAAGC--TCGTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCA 8166 | || | |||| | | ||||||||||| | |||| ||| ||| | || || Sbjct 10900 T--AACCCATCGTAATAAAGCTGATAAAATATTAACTGAACGAGCTTGGGAGAGAGTTTT 10957 Query 8167 AGCGAGAGACGCTGCTATTGGTGAAAAAGCTGCTGCTTGGAGTGTAAATAAAATCATGAA 8226 | | ||| | |||||| |||||| || ||| | | || | || | ||||| Sbjct 10958 GTCAAAAGATAGTAATATTGGGGAAAAAACTAGTGCATATATAGTTACCAATACTATGAA 11017 Query 8227 GTTAAAAAGACGTTTCGGTATGGGGATTAAAAA 8259 ||||| ||||||||||| ||||||| Sbjct 11018 AGCAAAAACTAAATTCGGTATGGGTCTTAAAAA 11050 >seq188530 Length=12191 Score = 104 bits (114), Expect = 5e-18 Identities = 230/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 5318 CCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCT 5377 ||||||||| | || | |||||||| || |||||| ||| ||||| || | ||| Sbjct 2704 CCACATTTTATTTTTTAAAGTTCTATTAAAGCGTTCAACTATTGATGCCTTCATATTTGA 2763 Query 5378 GAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTA 5437 || || ||| | || || | | | ||||| ||| | || || | ||| || Sbjct 2764 AAAAGTATTATAATGGTTAATTGTATATTCTTTCATAAGAGCCTTAAAATGGGAGTTATA 2823 Query 5438 AAACTCTTTACCCTGATCAACATGGAGATTCTTAGG-GATACGACCTTGCTGAAGTACAG 5496 ||| ||||| ||||||||| ||||| ||| || || ||| | ||| | || | | Sbjct 2824 AAATTCTTTTCCCTGATCAGAATGGATATTTTTGGGAGATTTTCCTTTGTTTAATTTGAT 2883 Query 5497 ACT---TCATAGCACTTGTGACAT--CTACACCACTTTTAGACTTAATTGGAACTGCCCA 5551 | | | || ||| || || ||| || |||||| || | ||| | ||| | Sbjct 2884 AATATGTTTTAATGCTTTCGAAATTTCTATTCCCGTTTTAGTTTTTAATGGCAATGCATA 2943 Query 5552 GGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGT 5611 |||||||||||||||| ||| || | || |||| ||| || | |||||||| | | | Sbjct 2944 TGCATATTTTGAAAATACATCAATTACAGTTAGCATATATTTAAAACCTTTATTAAATTT 3003 Query 5612 TGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTC 5653 |||||| || |||||||| || |||||| ||||| || || Sbjct 3004 TGCATACGGTATCATCTCCACTAAGTCAATCTGCCATGTATC 3045 >seq192081 Length=13998 Score = 96.9 bits (106), Expect = 7e-16 Identities = 232/345 (67%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 5318 CCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCT 5377 ||||||||| | || | |||| ||| || |||||| ||| |||||||| | | | | Sbjct 12640 CCACATTTTATTTTTTAAAGTTCGATTAAAGCGTTCAACTATTGATGCTTTCATACT--T 12583 Query 5378 GAATGTTGAA---TACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTT 5434 |||| ||| || | ||||| | | | || || ||| |||| || | ||| Sbjct 12582 GAATAA-GAACGGTAATGGTTTATTGTATATTCTTTTATAAGAGCTTTAAAATGGGAGTT 12524 Query 5435 GTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG-GATACGACCTTGCTGAAGTA 5493 ||||| ||||| ||||||||| ||||| ||| || || ||| | ||| | || | Sbjct 12523 ATAAAATTCTTTTCCCTGATCAGAATGGATATTTTTGGGAGATTTTCCTTTGTTTAATTT 12464 Query 5494 CAGACTTCATAGCA---CTTGTGACAT--CTACACCACTTTTAGACTTAATTGGAACTGC 5548 | | | || | ||| || || ||| || |||||| || | ||| | ||| Sbjct 12463 GATAATGTATTTTAATGCTTTCGAAATTTCTATTCCTGTTTTAGTTTTTAATGGCAATGC 12404 Query 5549 CCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGAC 5608 | |||||||||||||||| ||| || | || |||| ||| || | |||||||| | Sbjct 12403 ATATGCATATTTTGAAAATACATCAATTACAGTTAGCATATATTTAAAACCTTTATTAAA 12344 Query 5609 TGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTC 5653 ||||||| || |||||||| || |||||| ||||| || || Sbjct 12343 CTTTGCATACGGTATCATCTCCACTAAGTCAATCTGCCATGTATC 12299 >seq191812 Length=13280 Score = 82.4 bits (90), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 3848 CCGATGACGATTATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAATCAATACGCTTG 3907 ||||||| ||||||| | |||| || || |||| |||||| | || |||| Sbjct 12486 CCGATGAAGATTATGATCATGCTAAATCGGTTTGGAGAACTTTTAAATGTACTAA-CTTG 12544 Query 3908 G-AGAGTACTCGGACTTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAA 3966 ||| ||| | | ||||| ||||| || ||||| || || || || ||| | |||||| Sbjct 12545 TTAGATTACACTAAATTATATTTAAAAACAGATGTTCTCCTTTTAACAGATATTTTTGAA 12604 Query 3967 AACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACACTTTTATACAGCA 4026 || |||||| ||| |||| | | |||||| | || || || | |||||| || Sbjct 12605 AATTTTAGAAGTATTTGTAAAAGCATATACAAACTTGATCCATGTCAATATTATACTGCT 12664 Query 4027 CCAGGTCTTTCGAACGCTGCAATGTTAAA 4055 |||||| | ||| | |||||||||||| Sbjct 12665 CCAGGTTTATCGTGGGATGCAATGTTAAA 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97750483182840