Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq172082 212 7e-50 >seq172082 Length=56793 Score = 212 bits (234), Expect = 7e-50 Identities = 468/701 (67%), Gaps = 10/701 (1%) Strand=Plus/Plus Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || || | ||| || ||||| || ||||||| |||| |||| |||||||||||| ||| Sbjct 14672 AACAAACGATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATC 14731 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || ||||| || ||||| | ||| || || | ||| || || || || ||| Sbjct 14732 AAATTTACGGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATG 14791 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 || | || || ||| ||||||| | | | || ||||||||||| ||| ||| Sbjct 14792 ATTTCAATAATTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCA 14851 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||||||||| ||||| ||||| | || |||||||| || ||||| | || ||| Sbjct 14852 AAATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGC 14911 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGC 21599 || | || | || || | ||||||||| || ||||| | | ||| |||||||| | Sbjct 14912 ATAAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTG--AAGAAAATAC 14969 Query 21600 CCTCAACGGCAGCAAATGCAACTAAT-CGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 |||| || ||||||||||||| |||| || ||||| | ||| |||| | ||| Sbjct 14970 CCTCGACAGCAGCAAATGCAA-TAATACGCTCACCAAAATTAGCCGATTTAGATGAAATC 15028 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 || ||||| | ||||| |||| | || || |||||||| || || Sbjct 15029 CAAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAT 15088 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 |||| | | || ||| ||| | ||| |||||||||||| Sbjct 15089 AGATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCG 15148 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 || |||| |||||| || || || || || || || ||||| | ||||||| ||| Sbjct 15149 GAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGC 15208 Query 21839 ACCTC--GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 ||||| || | ||| |||| | | | |||||||| ||||| ||||| ||||||| Sbjct 15209 ACCTCTTGGGAGAAA--CGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAA 15266 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 | ||||||| | | | ||||||| ||||| || || || | | ||| ||| || Sbjct 15267 AGAATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAG 15326 Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 | ||| || || | ||| ||||| ||| ||||||||| Sbjct 15327 AATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAG 15367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530621179650400