Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq173136 251 2e-61 seq172082 118 3e-21 seq172937 84.2 6e-11 >seq173136 Length=30018 Score = 251 bits (278), Expect = 2e-61 Identities = 694/1060 (65%), Gaps = 13/1060 (1%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || |||||| | ||||| || | || ||||||||||||||| | || ||||| ||||| Sbjct 2098 ATGAATGGTAAGATTGTGGAGAGACCACAGCATATGTTAATGAGGGTAGCTATAGGTATA 2157 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | |||| ||||| | || || ||||| ||||| | | || ||| || Sbjct 2158 CATGGAGAGGATATTGATTCGGCCATAGAAACGTATAATTTGTTGTCTGAGCGTTATTTT 2217 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || ||| |||| || | | |||| ||| || ||||| |||| |||||| Sbjct 2218 ACCCATGCCTCGCCCACGTTATTTGCGGCTGCCACTAATAGGCCACAATTGTCCTCTTGC 2277 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 || || | | ||| || ||||| || |||||||| || | | | | | ||| Sbjct 2278 TTCCTGTTGACTATGGTGGCTGATTCTATTGAGGGTATTTTCAAGTCGGTGGAACAATGT 2337 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG 363729 ||| | ||||||||| || || || || ||| || ||||| | || | || || Sbjct 2338 GCTATGATTTCCAAGTCGGCGGGTGGTATAGGTATAAATGTCCACTGTATTAGGGCCAAG 2397 Query 363730 AACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTG 363789 | || || || || || ||| ||||| ||||| || |||||| | ||| Sbjct 2398 GGTACTTCTATCGATGGAACTAATGGCACCTCTAATGGTCTGGTACCGATGCTTAGGGTG 2457 Query 363790 TTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCT 363849 ||| | ||| || | || || ||||| ||||| || || || || || |||||| Sbjct 2458 TTTAATAATGTGGCCCGTTATGTAGACCAAGGTGGTGGCAAACGTCCTGGAGCCTTTGCT 2517 Query 363850 ATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG 363909 || ||| | || ||| ||| | ||||||||||| ||| | || | |||||| || Sbjct 2518 ATTTATTTGGAACCTTGGCATTCAGATATTTTTGAATTTTTAGATTTAAAGAAAAATACT 2577 Query 363910 GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT 363969 || ||||| || | || | ||||| || ||||| | ||| || | ||| ||| Sbjct 2578 GGTAAAGAAGAGCACAGAGCTAGAGATCTTTTTTATGCTTTATGGATTCCCGACTTGTTT 2637 Query 363970 ATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 ||||| | || || | | ||| | ||||| | | || || || ||||||| Sbjct 2638 ATGAAAAGAGTAGAAGAAAACGGTGAC---TGGTCCTTAATGTGTCCCCATAAATGTCCC 2694 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGAATCGG 364084 || || ||||| |||||||| || | || | | ||||| || ||||||| | Sbjct 2695 GGCCTGCAGGATGTCTGGGGTGAAGAGTTTGAACAGTTGTATACCAA--GTATGAAAAAG 2752 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 | || || ||| | || || |||||| ||||||||||||||||| || | | Sbjct 2753 AAGGCAAAGCTAATCGCACTGTTAAGGCACAGGCTCTATGGTTTGCCATCATTGAGGCCC 2812 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 | | || || || |||||||| ||||| ||||| ||| | || || |||||| |||| Sbjct 2813 AAGTAGAAACTGGTACACCCTACATGTTATACAAGGATGCCTGTAATCGCAAGAGTAACC 2872 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 |||| | | || || ||| | |||||||| ||||| || ||| | ||||| | | Sbjct 2873 AGCAAAATATAGGCACTATTAAATGCAGCAACCTGTGTACAGAAATTGTAGAATATTCTG 2932 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA- 364323 | ||||| || | ||||| ||||| | || || || |||||| |||||| | | Sbjct 2933 CCCCCGATGAAATAGCCGTTTGTAATTTGGCCTCCATTGCGCTTAATATGTTTGTTACAC 2992 Query 364324 --GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 || || || ||| || | | | | || || | | ||| | ||| Sbjct 2993 CTGAGAAAACATTCGACTTTAAGAAATTGAAAAATGTTACTAAAGTTATTACCAGGAATT 3052 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGC 364441 | | || |||| |||| ||||||||||| | || || || || |||||| ||| Sbjct 3053 TAAATAAAATTATAGACATAAATTATTATCCCCTGCCAGAGGCAAAGAAATCTAATCTGC 3112 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 |||||||||| |||||| | ||||| ||||| | ||||| Sbjct 3113 GTCATCGCCCCATTGGTATAGGTGTCCAGGGTTTTGCTGA 3152 >seq172082 Length=56793 Score = 118 bits (130), Expect = 3e-21 Identities = 355/538 (66%), Gaps = 19/538 (4%) Strand=Plus/Minus Query 22114 GCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATTTCCACTGATAAGACGGATTGG 22173 || ||||| ||| | ||| ||| ||| ||||| | |||| ||||| | || ||| Sbjct 15378 GCTGAAGCATCCTTTTGGACCGTTGAGGAAGTTGATCTCTCCAAGGATAATTCTGACTGG 15319 Query 22174 CCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACC 22233 || |||||| || || |||| |||||||| | | |||| ||||||||||| | Sbjct 15318 GAAAGACTTACCGACAATGAACGTCATTTTATTTCACACGTTCTGGCATTCTTTGCCGCT 15259 Query 22234 GCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAATTCAATACCCA 22293 | || ||||||||| ||| ||||| || ||| | || | ||| || Sbjct 15258 TCCGATGGTATAGTTAATGAAAATCTTGTTGAACGTTTCTCCCAAGAGGTGCAAGTAACA 15199 Query 22294 GAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT 22353 ||||| | |||||||||||| | ||||| || |||||||| ||| | |||| ||| Sbjct 15198 GAGGCTCGTTGTTTCTATGGTTTCCAAATTGCCATGGAAAATGTACACTCCGAAATGTAT 15139 Query 22354 TCTATGATGCTACAGTCACTCGTAGAAGATAAAGAC---GAACAACGAAACT---TATTC 22407 ||| | | | |||| || | ||| || || |||||| | | |||| Sbjct 15138 AGTATTTTAATTGA--CACT--TACAT--TAAGGATCGTGATCAACGAGAATATCTATTT 15085 Query 22408 CGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATG 22467 || ||| || || | | | ||||| |||||| |||||||| || ||||| Sbjct 15084 AATGCTATTGAAACTATGCCAGCTGTTAAGCGTAAGGCCGATTGGGCCATGTCTTGGATT 15025 Query 22468 AACAATGAAC--GTTCATTCGCG-GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATT 22524 | || | | ||| | || ||| ||||||||||||||| || || || ||| Sbjct 15024 TCATCTAAATCGGCTAATTTTGGTGAGCGTATTATTGCATTTGCTGCTGTCGAGGGTATT 14965 Query 22525 TTCTTTTCTGG-AGCATTTTG-TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGG 22582 ||||| ||| || ||||| | | || |||||||| || ||||||| ||||||| | Sbjct 14964 TTCTTCAGTGGTAG--TTTTGCTTCGATATTTTGGCTCAAGAAACGTGGTCTTATGCCTG 14907 Query 22583 GTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGC 22640 | || || || || ||||| || || || ||||||||| | ||| |||||||| Sbjct 14906 GCCTTACATTCTCCAATGAATTGATCTCACGTGATGAGGGTTTACATTGTGATTTTGC 14849 >seq172937 Length=23020 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 ||||| | || ||||||||||| ||| | ||| | ||||||| ||||| |||| Sbjct 13080 TTACGCACTGTACCGTCATAATTTACCATTACAGATTCCATAGCCTTTATAAGACGACGC 13139 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCC 65987 ||||| |||||| | | ||||||||||| || ||||| | ||||||||||| || Sbjct 13140 TGGATATAACCAGTTTCAGCAGTTTTTACAGCAGTATCGATAAGACCTTCACGACC 13195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300139668503720