Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq22680 120 3e-22 seq188148 102 7e-17 seq175891 93.3 4e-14 seq137448 84.2 2e-11 >seq22680 Length=2395 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||||| | ||||| |||||| |||| ||||| | || || | || ||||| || Sbjct 1003 AAATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCA 944 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| ||||| | || ||| |||||| ||||||||||| || ||||| || | Sbjct 943 CAGACACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACC 884 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| ||| |||| | || || || || ||||| |||| || | | | | ||| || | Sbjct 883 AACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTACA 824 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| ||| || | ||| | || ||||| |||||||||| Sbjct 823 ACATCCAAAAGGAAAGCACCTTACATCTGGTACTAAGACTGAGAGGAGG 775 >seq188148 Length=18106 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||||||| ||| | |||||| | ||||||||| | | Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || ||||||||||| || || || |||||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || ||| || ||| | ||||||| | | | | ||| || ||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGT 3631 >seq175891 Length=10111 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | |||||| | ||||| ||| ||| | Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAG-CCATC 9288 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| || ||| || |||||||| || ||||| ||||| Sbjct 9289 TGATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 9348 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| || ||| ||||| | ||||||| | | | ||||||||| Sbjct 9349 GCAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAA 9408 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| ||||| |||||||| |||| || || || Sbjct 9409 CATCCAAAAGGAATCTACCCTTCACTTGGTTTT 9441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||||||| | || ||| | ||||| ||| ||| | Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAG-CCATC 9060 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || || || || ||||| || || || || || Sbjct 9061 TGATACTATAGAGAATGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 9120 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTAT 24167 ||| | |||||| || ||| ||||| | ||||||| || | | ||| | ||||| Sbjct 9121 ACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTG--ATTAT 9178 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| |||||||| |||| || || || Sbjct 9179 AACATCCAAAAGGAATCTACCCTTCACTTGGTTTT 9213 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || || || || |||||||| || | || ||| | || ||||| | Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || ||| | ||||| || ||| || || || || || || || ||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | |||||| | ||| || ||| | ||||| | | | | |||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||||||||| ||||||| || Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGT 8298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||| |||||| | ||||| | || || || | Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || ||||||||||| || || || |||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTATA 24168 ||| | | || | || || || ||| | ||||||| || | | ||| |||||| | Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTC--CGATTACA 8723 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||||||||||||| |||| ||||| ||| Sbjct 8724 ACATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8758 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || ||||| || || | || ||| | ||||| ||| ||| | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAG-CCATC 8832 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| || || ||||||||||| || || || ||||| Sbjct 8833 TGATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 8892 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | | || | | || || ||| | ||||||| | | | | || || || Sbjct 8893 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAA 8952 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||| |||||||||||||| |||| ||||| ||| Sbjct 8953 CATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8986 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| ||||| ||| | || || | || || ||| | | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| ||||| ||||| || || || |||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||| ||| | ||||| | | | | ||||| || Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||||||||| ||| | ||||| || ||| Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTA 8530 >seq137448 Length=735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||||| | ||||| |||||| | || ||||| | ||||| | ||||| || | Sbjct 257 AAATGCAAATCTTTGTCAAAACACTCACGGGAAAGACAATTACATTGGAAGTTGAAGGGG 198 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || || || ||| | || || || || ||||||||||| |||||||| || | Sbjct 197 GTGATACAATTGAGAATGTAAAGGCGAAAATACAGGACAAAGAAGGGATACCTCCTGACC 138 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || ||| |||| | | || ||||| || || |||| || | | | || |||| Sbjct 137 AGCAAAGATTGATATTTGCAGGGAAGCAGCTTGAGGATGGAAGGACATTAAATGACTATA 78 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 | || || || || ||| | ||| | ||||| ||| ||||||| || |||| ||| Sbjct 77 ATATACAGAAGGAGAGTACTTTACATCTTGTGTTGAGACTGAGAGGTGGTAAATAAAGAT 18 Query 24229 TCTT 24232 | || Sbjct 17 TGTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428927539431300