Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq173136 136 4e-27 seq188148 131 2e-25 seq175891 100 3e-16 seq22680 84.2 2e-11 seq5262 84.2 2e-11 >seq173136 Length=30018 Score = 136 bits (150), Expect = 4e-27 Identities = 696/1095 (64%), Gaps = 20/1095 (2%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || | || || || | | |||||| || ||| | |||||| || | Sbjct 3539 TGATTAACAACATTGAATTCTCCTGATAGCACACGTCGGGTATATATGTTAGAAGTATAA 3480 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || |||||||||| || |||||||| | ||| || |||||| || Sbjct 3479 GGTTCAAATGATTCATTATTGCCCAAAATCTGAGCGGTAGATGCTGTAGGCATGGGAGCA 3420 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | || || || || | || || | |||||| | ||| |||| | ||||||| Sbjct 3419 ATAAGCAAAGAGTTACGTACACCATGTTGCTTGATTTTTTCTTTTAATGCCGACCAATCC 3360 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || | ||| || | | |||||| || || || | || || | ||| | || Sbjct 3359 CACAAGTCAGTAGGTGTTTTATTCCACATATCATATTGTAGTATTCCTTTGCTAACTGGA 3300 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 | ||| || ||| || | || | ||| || | || ||||| ||||| | Sbjct 3299 CAGCCGGGATAGGTTTCATATGTACCATATTTTTCTGCCAATTCACAACTGGCCTCTAAG 3240 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || ||||||| || || ||||| ||| | | | || | || ||||| Sbjct 3239 GCACCATAATAAATGGTTTCAAATATTTGTTGGTTCAATAAAAAGGCCTGTTCACTCTCA 3180 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 || || | ||||| | | |||| ||| || | ||||| | || | || ||||| Sbjct 3179 TAGGGGAAGCGCATTAAAATCAAAGTATCAGCAAAACCCTGGACACCTATACCAATGGGG 3120 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAAT 145533 ||||| || || || | ||| || | | ||||| ||| ||| ||||| Sbjct 3119 CGATGACGCAGATTAGATTTCTTTGCCT-CTGGCAGGGGATAATAATTTATGTCTATAAT 3061 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTT-GTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 |||||| || || | || || |||| |||| | ||| || | |||||| || Sbjct 3060 TTTATTTAAATTCCTGG-TAATAACTTTAGTAACATTTTTCAATTTCTTAAAGTCGAAT- 3003 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 | | ||| ||| | |||| | || || || |||||||||||||| || Sbjct 3002 --GTTTTCTCAGGTGTAACAAACATATTAAGCGCAATGGAGGCCAAATTACAAACGGCTA 2945 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 | || |||| | | |||| ||| || || | |||| ||||| ||||| || || | Sbjct 2944 TTTCATCGGGGGCAGAATATTCTACAATTTCTGTACACAGGTTGCTGCATTTAATAGTGC 2885 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | | ||||||||| ||||| || | || || || |||||||| | |||||| ||| | Sbjct 2884 CTATATTTTGCTGGTTACTCTTGCGATTACAGGCATCCTTGTATAACATGTAGGGTGTAC 2825 Query 145773 CAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGCTG 145830 |||| || || || | ||| | ||| |||| | | |||| || | | | | || Sbjct 2824 CAGTTTCTACTTGGGCCTCAATGATGGCAAACCAT--AGAGCCTGTGC-CTTAACAG-TG 2769 Query 145831 CTGGTAGC--GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 | |||| ||| |||| ||| || || | || | || |||||| | ||| || Sbjct 2768 CGATTAGCTTTGCCTTCTTTTTCATACTTGGTATACAACTGTTCAAACTCTTCACCCCAG 2709 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 ||| |||||||||||| || | ||||||||| | ||||| | ||||| | | Sbjct 2708 ACATCCTGCAGGCCGGGACATTTATGGGGACACATTAAGGACCAGTCACCGTTTTCTTCT 2649 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008 || | | ||||||||| || || | ||| | || || | | || | ||| || Sbjct 2648 ACTCTTTTCATAAACAAGTCGGGAATCCATAAAGCATAAAAAAGATCTCTAGCTCTGTGC 2589 Query 146009 TCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGG 146067 || || ||| | ||| ||| |||| ||| | | | | || || | ||||| || Sbjct 2588 TCTTCTTTACCAGTATTTTTCTTTAAATCTAAAAATTC-AAAAATATCTGAATGCCAAGG 2530 Query 146068 TTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTAC 146124 ||| | ||| | || | |||||| |||||| ||||| ||||| || | ||| | Sbjct 2529 TTCCAAATAAATAGCAAAGGCTCCAGGACGTTTGCCACCACCTTGGTCTACATAACGGGC 2470 Query 146125 CATGTTGTTAAAGAC 146139 || || ||||| || Sbjct 2469 CACATTATTAAACAC 2455 >seq188148 Length=18106 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || ||||||| || || |||||||| |||||||| ||| | Sbjct 3613 CCACCACGAAGGCGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 3672 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | || || || ||| |||| ||||| || || || || ||| Sbjct 3673 AAGGTACGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGG 3732 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || |||| | ||||| Sbjct 3733 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACT 3792 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| |||| |||||| ||||| |||||||| Sbjct 3793 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq175891 Length=10111 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| | ||||| || | ||| || || ||||| |||||||||||| | Sbjct 8772 CCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGAC 8713 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| ||||||||||||| || || || || Sbjct 8712 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGA 8653 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| |||| | | | || | |||||| | | || | Sbjct 8652 ATACCTTCTTTGTCTTGGATTTT-GGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAAC 8594 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||| || |||| ||||| |||||||| |||||| Sbjct 8593 CTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||| ||||||||||| ||||| |||||| | Sbjct 9684 CCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGAC 9625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | || || || ||| | || ||||| || || || ||||| Sbjct 9624 AAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 9565 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||||| | || | ||||||| | ||| | Sbjct 9564 ATACCTTCTTTATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACT 9505 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | ||||| ||||| || ||||| Sbjct 9504 TCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || ||||| | || ||||| | || || || |||||||| |||||||| Sbjct 8545 GCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGA 8486 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || | || ||||| || | || ||||| || || || || || Sbjct 8485 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 8426 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||| ||||| ||| ||| || || | | || | |||||||| | ||| | Sbjct 8425 GATTCCTTCCTTGTC-TTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAA 8367 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || | || || || || || ||||| Sbjct 8366 CCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | ||||| || | ||| || || ||||| |||||||| || | Sbjct 9000 CCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAC 8941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || |||||||||| || || || || || Sbjct 8940 AATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 8881 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | ||||| | | ||| | Sbjct 8880 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACT 8821 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||||| ||| ||||| ||||| ||||| Sbjct 8820 TCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || |||||||||||||||||| | Sbjct 8316 CCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAC 8257 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | || || || || | || ||||| || || || || || Sbjct 8256 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 8197 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||||| ||||| | ||| | |||||| | | |||| Sbjct 8196 ATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACC 8137 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || |||| || || ||||| || ||||| Sbjct 8136 TCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 >seq22680 Length=2395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||||| ||| |||||||| |||||||| ||| | | ||| | ||| Sbjct 790 AGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGTTAAGGGTCCTTCCATCC 849 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||| || |||||| | || || | || ||||| |||||||||||||||||||| Sbjct 850 TCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCT 909 Query 131143 GTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| || | | || | || || ||| |||| || | || | || Sbjct 910 TGGATCTT-TGCTTTTACGTTTTCGATCGTGTCTGTGCTTTCGACCTCCAAGGCTATTGT 968 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || || || ||||| Sbjct 969 CTTTCCTGTTAGTGTTTTGACAAAGATTTGCAT 1001 >seq5262 Length=11329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||||| ||||||||||| ||||| || Sbjct 3152 CCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAA 3211 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||| || || || | |||||||| ||||| || || || Sbjct 3212 AGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 3271 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | |||| | | | || | ||||| | | |||| Sbjct 3272 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGAC 3330 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| ||||| ||||| || || |||||||| Sbjct 3331 CTCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470877255206400