Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq175891 145 7e-30 seq188148 125 6e-24 seq5262 113 4e-20 seq185055 102 7e-17 >seq175891 Length=10111 Score = 145 bits (160), Expect = 7e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| ||||||| | || || ||| | || Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| ||||| ||||| || || || || Sbjct 8378 GATACTATTGAA--AATGTAAAAGCTAAAATTCAA-GACAAGGAAGGAATCCCCCCAGAT 8434 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| ||||||||||| ||||| | ||||| || |||||| Sbjct 8435 CAACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTAC 8494 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||||||||| | ||||| || Sbjct 8495 AATATTCAAAAAGAATCCACATTGCATTTGGT 8526 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| || || || || ||||||| | || || || | || Sbjct 8089 AATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCTTC 8148 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| | ||| | |||| ||| || || || || ||||| || || | Sbjct 8149 TGATACTATTGAGAACGTCAAGGCTAAAATTCAA-GATAAGGAGGGTATTCCCCCAGATC 8207 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | ||||||||||| |||||||| ||||| | |||||| || |||||||| Sbjct 8208 AACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTACA 8267 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | |||||||||||||| || || ||||| || ||| Sbjct 8268 ACATTCAAAAAGAATCTACACTTCATTTGGTTCTA 8302 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||||| ||||| || | ||||| | ||||| ||| | ||| Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| |||||| ||||||||||| ||||| || || ||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || |||||||| ||||||| || || || || ||||| Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||||||||| || || || ||||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGT 8982 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || || ||| | || ||| | || || || | || Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | | |||| |||| || ||||||||||| ||||| || || || Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAA-GACAAAGAAGGTATTCCCCCAGATCA 8664 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || |||||||| ||||||| || || || ||||||||| Sbjct 8665 ACAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAA 8724 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || || ||||| || | || | ||||| Sbjct 8725 CATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGG 8772 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| |||||| ||||||| | ||||| ||| | || Sbjct 9990 ATGCAAATCTTCGTCAAGACCTTGACAGGTAAAACCATCACCTTGGAAGTTGAGCCATCC 10049 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||||||| ||||||||||| ||||| || || ||| Sbjct 10050 GACACCATTGAAAATGTCAAGGCAAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 10109 Query 25119 CA 25120 || Sbjct 10110 CA 10111 >seq188148 Length=18106 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || |||||| |||| || | ||||| ||| | || Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| || || || || ||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||| ||||||| ||| || || ||| ||||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| ||||||| || || Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGTACT 3628 >seq5262 Length=11329 Score = 113 bits (124), Expect = 4e-20 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| |||||||| || || | || ||||| |||||||| | || || || | | Sbjct 3380 CAATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTT 3321 Query 25057 CTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||| || || || | || |||| || | ||| |||||||| || |||||||| | Sbjct 3320 CTGATACCATTGAA--AATGTTAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCAG 3264 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | |||||||| || ||||| || ||||||| ||| ||| | || | Sbjct 3263 ATCAGCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACT 3204 Query 25174 ACAATATTCAAAAAGAATCCAC 25195 ||||||||||||| ||||| || Sbjct 3203 ACAATATTCAAAAGGAATCGAC 3182 >seq185055 Length=12631 Score = 102 bits (112), Expect = 7e-17 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG 25079 |||||||| ||| | ||||| | ||||| || | || || || || || | ||| Sbjct 12631 TTGACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAG 12572 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 || ||| || |||||||| ||||| || || ||||| || | || || || ||| Sbjct 12571 GCTAAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGC 12512 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 ||||||||||| |||| || ||| || || ||||| || ||||| ||||| || || Sbjct 12511 AAACAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTC 12452 Query 25200 CATTTAGTGCTAAGGCTAAGAGGAGG---AAATTA 25231 ||||| |||||| | || | ||||| |||||| Sbjct 12451 CATTTGGTGCTACGTCTTCGCGGAGGCGCAAATTA 12417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432311583134900