Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq172082 361 6e-95 seq178041 134 2e-26 seq174340 129 7e-25 seq390 127 2e-24 seq187667 125 8e-24 seq179714 120 3e-22 >seq172082 Length=56793 Score = 361 bits (400), Expect = 6e-95 Identities = 510/713 (72%), Gaps = 10/713 (1%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| || | ||| || ||||| || || || | |||||||| | ||||||||| || | Sbjct 14671 CAACAAACGATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAAT 14730 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | ||| |||||||| || || ||||| || | || ||| || || || | Sbjct 14731 CAAATTTACGGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAAT 14790 Query 93037 GATTTCTATTACTCTA---CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 |||||| || | |||| ||| | || ||| |||| | || || ||||||| Sbjct 14791 GATTTCAATAATTCTATCCCTACTAGGACGTT---GTACCAAATGTTTAAACATTAAAAC 14847 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||| || ||||||||| || || ||||| ||||| |||||| |||||| | || Sbjct 14848 AGCAAAATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCC 14907 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || || |||||||||||||||||||| ||||||||||||||| || || || Sbjct 14908 AGGCATAAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAAT 14967 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA- 93272 ||| || || || |||||||| | |||||| || ||||||| || || ||| | ||| Sbjct 14968 ACCCTCGACAGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTA--GATGAA 15025 Query 93273 -TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 |||| | ||||||||||| || ||||| | || | ||||| ||||| ||| Sbjct 15026 ATCCAAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTA 15085 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 ||||| || ||||| | || ||| ||||| || || ||||| | | ||||||| Sbjct 15086 AATAGATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATT 15145 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || || ||||| ||||| ||||||||||| || |||||||| | ||| || || | Sbjct 15146 TCGGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACT 15205 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 ||||| ||||| || || | || || ||||||||||| |||||||||||||| || ||| Sbjct 15206 TGCACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCA 15265 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 || || |||| | || |||||||| |||| || |||| | ||||| || Sbjct 15266 AAGAATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCA 15325 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || ||| || || ||||| ||||| || || |||||||| |||||||| || Sbjct 15326 GAATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTTCAGC 15378 >seq178041 Length=13422 Score = 134 bits (148), Expect = 2e-26 Identities = 85/91 (93%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGG 126318 |||||||||||||||||||| |||||||||||||||||||||| |||||||||| || Sbjct 9851 TTACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGG 9910 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||||||| Sbjct 9911 GAGCGTGGGTTCGAACCCCACACCTGACAAA 9941 Score = 127 bits (140), Expect = 2e-24 Identities = 88/99 (89%), Gaps = 7/99 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 10436 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 10495 Query 126324 TGGGTTCGAACCCCACACCTGACAAA-----TTATTATT 126357 |||||||||||||||||||||||||| |||||||| Sbjct 10496 TGGGTTCGAACCCCACACCTGACAAAAGAAGTTATTATT 10534 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 9413 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 9472 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 9473 TGGGTTCGAACCCCACACCTGACAAA 9498 >seq174340 Length=20921 Score = 129 bits (142), Expect = 7e-25 Identities = 88/97 (91%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 6575 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 6634 Query 126323 GTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 ||||||||||||||||||||||||| ||||||| || Sbjct 6635 GTGGGTTCGAACCCCACACCTGACAAGAATTATTTTT 6671 >seq390 Length=15735 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 13567 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 13626 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 13627 GTGGGTTCGAACCCCACACCTGACAAA 13653 >seq187667 Length=54086 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 45125 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 45066 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 45065 GTGGGTTCGAACCCCACACCTGACAA 45040 >seq179714 Length=7722 Score = 120 bits (132), Expect = 3e-22 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 391 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 332 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||| ||||||||| Sbjct 331 GTGGGTTCGAACCCCACATCTGACAAAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555521132130400