Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq173136 221 1e-52 seq175891 150 2e-31 seq188148 147 2e-30 seq5262 145 6e-30 seq185055 123 2e-23 >seq173136 Length=30018 Score = 221 bits (244), Expect = 1e-52 Identities = 709/1088 (65%), Gaps = 33/1088 (3%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 || || ||||||| ||||| | || || || || || | |||||||||||||| || Sbjct 3881 TCTACAGTAAATTGTATAGCATTGGCGGCTGGTTTTGTTCTTAAATAGTACATGCCGGTC 3822 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901 || || || ||||||| | | || || | ||| || |||| | |||| | Sbjct 3821 TTTAAGCCAGCCTTCCAAGAATAGAAATGTATAGAGGTTAATTTACCGTAATTAGGTTCA 3762 Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961 | || ||||| |||||||||||||| || || | ||| |||||||| ||||| Sbjct 3761 GCTACGTGTATGTTAAAGGATTGACTTTGATCTATGAAAGCGCCACGATCGGCGGCCATT 3702 Query 128962 CCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTT 129021 ||| | || || |||||||| || || || ||||| || | | | ||| Sbjct 3701 TTAATTGTGCTCTTGACGGAAATTTCCCAAACTGTCTTATAAAGGTCACGAATATTTTTG 3642 Query 129022 GGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGT 129081 || |||||||| ||| || | ||| || | |||||||| ||| ||| | Sbjct 3641 GGAATTTCTTCTATGGCTTGTATAGATCCGCGATTGGATATAATTTTATTTTTCATATTA 3582 Query 129082 TCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA----CTTG 129137 || | |||||| |||| | ||||| | |||| || || | |||| | | Sbjct 3581 TCATCCCACAAATCAAGTTCTGTTAAATCTT---TCAA-TAAATGATGATTAACAACATT 3526 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || || | | || || || || ||||| || | || ||||| ||||| Sbjct 3525 GAATTCTCCTGATAGCACACGTCGGGTATATATGTTAGAAGTATAAGGTTCAAATGATTC 3466 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAG 129255 ||| ||||| || || ||||| || | || || |||||| ||| | |||||| || Sbjct 3465 ATTATTGCCCAAAATCTGAGCGGTAGATGCTGTAGGCATGGGAGCAATAAGCAAAG--AG 3408 Query 129256 TTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTG 129315 || || | ||| || || || || | || ||||||| | ||| ||||||| || Sbjct 3407 TTACGTACACCATGTTGCTTGATTTTTTCTTTTAATGCCGACCAATCCCACAAGTCAGTA 3348 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAA 129371 ||||| | |||||||| || ||||| | ||| || | |||||| | | ||| Sbjct 3347 GGTGTTTTATTCCACATATCATATTGTAGTATTCCTTTGCTAACTGGACAGCCGGGA--- 3291 Query 129372 GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAA 129431 |||| || | || || || ||||||||| ||||| || || || || ||| | Sbjct 3290 -TAGGTTTCATATGTACCATATTTTTCTGCCAATTCACAACTGGCCTCTAAGGCACCATA 3232 Query 129432 ATAAATTGTTTCGGCAATTTTGGT--GTTCAACACTTTGGCCTGGTCGCTTTCGTACGGC 129489 |||||| ||||| ||| || || |||||| | |||||| || || || || || Sbjct 3231 ATAAATGGTTTCA--AATATTTGTTGGTTCAATAAAAAGGCCTGTTCACTCTCATAGGGG 3174 Query 129490 ATACGCA---ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGA 129546 | |||| | || |||| || || || ||||| || | ||| | ||| ||||| ||| Sbjct 3173 AAGCGCATTAAAAT--CAAA-GTATCAGCAAAACCCTGGACACCTATACCAATGGGGCGA 3117 Query 129547 TGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTG 129606 || ||| ||||| | |||| || |||||| || || |||||||||||||| Sbjct 3116 TGACGCAGATTAGATTTCTTTGCCTCTGGCAGGGGATAATAATTTATGTCTATAATTTTA 3057 Query 129607 TTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCT 129666 ||||||||| || | || ||| || || | ||| || | | ||| | | | | | Sbjct 3056 TTTAAATTCCTGGTAATAACTTTAGTAACATTTTTCAATTTCTTAAAGTCGAA--TGTTT 2999 Query 129667 ACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCG 129726 | | ||| ||||| ||| | ||| ||||||||||| || ||||| |||| Sbjct 2998 TCTCAGGTGT-AACAAACATATTAAGCGCAATGGAGGCCAAATTACAAACGGCTATTTCA 2940 Query 129727 TTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | | || || || |||||||| | |||| || || |||||| ||||| | | Sbjct 2939 TCGGGGGCAGAATATTCTACAATTTCTGTACACAGGTTGCTGCATTTAATAGTGCCTATA 2880 Query 129787 TGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTT 129846 | | || ||||| || || || ||||| ||||| | |||||| || || || ||| Sbjct 2879 TTTTGCTGGTTACTCTTGCGATTACAGGCATCCTTGTATAACATGTAGGGTGTACCAGTT 2820 Query 129847 TCGACTTG 129854 || ||||| Sbjct 2819 TCTACTTG 2812 >seq175891 Length=10111 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||||||||| || || |||| | ||||| || | | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| |||||||| || |||||||| || |||||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || ||| ||| || | || || |||||| Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| ||| | || ||||| || || | || || ||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGTGGT 9001 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || ||||| ||||| | || || || | || Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||||| || || || || |||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| || || || ||||| | || |||||||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||||||||| | ||||| || || || || || || || Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGG 8544 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || ||||| || || || |||| | || || ||| | Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || | |||| ||||||||||| |||||||||||||| || ||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || |||||||| ||||| || || || ||||| | ||||||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| || | ||||| ||| | || | || || ||| Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGTTCTACGTCTTCGTGGTGGT 8317 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| ||||| || ||||| | || || || || ||| | | Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||| |||||||| || |||||||| || |||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || || ||| || || | |||||||||||| Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| ||| | || ||||| || || | || |||||| Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGGT 8773 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || ||||| || || ||||| | ||||| || | || Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| |||||| ||||| || || |||||||| || |||||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| || || || ||||| | |||||||| ||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || |||||||| | || || ||| Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGGT 9685 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || ||||| || || | || | ||||| || | | Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||||||||||| || || |||||||| || ||||| Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||||| || ||| || || | |||||||| ||| Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAAC 9409 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || |||||||| | || || ||| Sbjct 9410 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGGT 9457 >seq188148 Length=18106 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || ||||||||||| |||||||| | || | ||||| || | Sbjct 3841 AGATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTT 3782 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | || || |||| ||||| |||||||| || ||||| || || |||| Sbjct 3781 CCGACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATC 3722 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||||||| | || || ||||| ||||| || || ||| || ||| | ||||| |||| Sbjct 3721 AACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACA 3662 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||||| |||||||| ||||||| || Sbjct 3661 ACATCCAAAAGGAATCCACTTTACATTTGGT 3631 >seq5262 Length=11329 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| |||| ||||| || |||| ||||| || ||| | | Sbjct 3378 ATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTCT 3319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 3318 GATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCAG 3259 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || |||||||| || ||| || || | || || ||||| Sbjct 3258 CAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAAT 3199 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| ||||| || | || || |||||||| Sbjct 3198 ATTCAAAAGGAATCGACATTGCACTTGGTTTTGCG 3164 >seq185055 Length=12631 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || ||||| ||||| ||||| | ||||| ||| | |||||||| | || || | || Sbjct 12631 TTGACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAG 12572 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || ||||| || || || ||||| || |||||||||||| | || || || ||| Sbjct 12571 GCTAAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGC 12512 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 ||||| ||||||||| ||| || | || || |||||||| ||||| ||||| || | Sbjct 12511 AAACAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTC 12452 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || | || | |||||||| Sbjct 12451 CATTTGGTGCTACGTCTTCGCGGAGG 12426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418743483379900