Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq31717 93.3 9e-14 seq191265 91.5 3e-13 >seq31717 Length=19532 Score = 93.3 bits (102), Expect = 9e-14 Identities = 189/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||||||||| || || || ||| ||| || |||||| || | | |||||| || Sbjct 6931 GTGAAAATATAACGAGCGCTAGCGCAATCTTTGCCACCCGTTAAACGAGTACCGAATTGA 6990 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | | | ||||||||||| || ||||||| || || | || || Sbjct 6991 CCTCTAGGCTCTAGCAAATTGATGTTATTAGAACCCACATAATTTTGAGCTAAATTAACA 7050 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAACGTAACC 297615 || ||| ||| ||||| |||| ||||| || ||||| | || || ||||| |||| Sbjct 7051 ATAGTCATTTGTAGAGAGACTTCACCATGATGGTAGGCAGACAT-TTCAGCAACAGAACC 7109 Query 297616 GCTGAACTGTGCAACCTTCACGT--CGGTCGTCAAATTGCGCTTGAA--AGCTGAATATA 297671 | || || |||||||| || | || | ||| ||| || ||||| || |||| ||| Sbjct 7110 GGACAATTGAGCAACCTTGACTTCACGTTTGTC--ATTACGTTTGAAACAGGTGAACATA 7167 Query 297672 TCACTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 || || |||||| ||| || |||||||| || Sbjct 7168 --ACCTTACGTTGACCAGGCTTAAAACCATCCAC 7199 >seq191265 Length=39239 Score = 91.5 bits (100), Expect = 3e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 68503 TGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACT 68562 |||| | || ||||| || ||| || ||||| | || || |||| || ||||| Sbjct 18224 TGTATGGTTTCTGGATTGTTATAAACTATCGTGAAGCCTACAATATGTTTGCCTGCAATG 18165 Query 68563 CGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCA 68622 || ||||||||||| || | ||||| | | || ||||| |||||||| | Sbjct 18164 GTATACTCTTCAATCACGAATCACCTAGAAGAGGTGAAAATTTTGTGACACGTAAAATTA 18105 Query 68623 CGAAGGT-GGTCGCGAATATTT---TCAATGGTGTCGAAAAATGCATGTATCTCGGTAAT 68678 | | | | || || || |||| ||||| | ||| | | || || | |||||| Sbjct 18104 C-ACGTTCCGTTGCCAAGATTTATCTCAATCAATTGGAATATT--TTGAAT-TGGGTAAT 18049 Query 68679 ATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATG 68738 ||||| | ||| | |||||||| |||| | |||||| ||||| || |||||| ||||| Sbjct 18048 TTAGATTCAAAACGTGATTGGGGCCATGCCATGGATTATGTAGAGGCTATGTGGATGATG 17989 Query 68739 CTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779 |||||| ||||| || |||||||| ||||| || || Sbjct 17988 TTGCAACGTGATACACCCTCGGACTATGTCATTGCCACTGG 17948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100160415101000