Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5262 105 6e-18 seq175891 102 8e-17 seq185055 89.7 5e-13 seq173136 82.4 7e-11 >seq5262 Length=11329 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||||||||| || | ||||| ||||| || | || || || |||||||||||||| || Sbjct 3148 TGCTCCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTC 3207 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || ||| ||| || | |||||||||||| | || || || |||||||| || Sbjct 3208 AGAAAGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGG 3267 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || ||||| |||||| ||| | | || || | | ||| | ||| || | | | Sbjct 3268 TGGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTT 3326 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| || | || | || || || || || ||||| ||||| |||||||| || Sbjct 3327 CGACCTCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCATTGC 3381 >seq175891 Length=10111 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || || |||||||| | || || |||||||||||||||||||| | Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||||| ||||| | ||||| || || ||||| || || Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| ||| || || | | ||| | || || | | ||| || Sbjct 8424 ATTCCTTCCTTGT-CTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAAC 8366 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 8365 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || || || | ||||| |||||||| || ||||| || | Sbjct 9000 CCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAC 8941 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| ||||| |||| || || || ||||| || || Sbjct 8940 AATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 8881 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| ||||| | ||| | ||| || | ||| ||| Sbjct 8880 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACT 8821 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| | ||| ||||||||||| ||||| Sbjct 8820 TCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 >seq185055 Length=12631 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| || ||||| | || | ||||||||| | ||||| || ||||| || ||||| || Sbjct 12422 TGCGCCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTC 12481 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| |||| ||||| |||||| ||||||| || || ||||| || Sbjct 12482 AGACAGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGG 12541 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||| || || || ||| || ||| | | ||| | ||| || | || Sbjct 12542 GGGAATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTC 12601 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||||| | || | ||||||||||||| Sbjct 12602 GACTTCCAAAGTGATAGTTTTGCCGGTCA 12630 >seq173136 Length=30018 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694 || || |||||||| ||||| ||||| | || || | | |||| | ||||| || Sbjct 2972 GCAATGGAGGCCAAATTACAAACGGCTATTTCATCGGGGGCAGAATATTCTACAATTTCT 2913 Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTG 146751 | || ||||||||||| || || |||| | ||||| |||||||| |||| || Sbjct 2912 GTACACAGGTTGCTGCATTTAATAGTGCCTATATTTTGCTGGTTACT---CTTGCGATTA 2856 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 |||| |||||||| | |||||| ||| || ||||| || | || ||| | |||| Sbjct 2855 CAGGCATCCTTGTATAACATGTAGGGTGTACCAGTTTCTACTTGGGCCTCAATGATG 2799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474356863950400