Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq137448 114 1e-20 seq22680 100 3e-16 seq175891 84.2 2e-11 seq150344 82.4 9e-11 >seq137448 Length=735 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 |||||| || ||||| | | |||||| ||||| || ||||||||||| || ||||| || Sbjct 22 TTATTTACCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATA 81 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || | | || || |||||||| || || |||||||| | |||||||| Sbjct 82 GTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTC 141 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | | || |||||| || ||| ||| | || | | || || | | Sbjct 142 AGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCC 201 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 ||| || |||| || || || || ||||| || ||||| |||||||||||||||| Sbjct 202 TTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTT 257 >seq22680 Length=2395 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46363 TTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTC 46422 ||| |||||||| | | | |||||||| || || || ||||||||||| |||||||| Sbjct 771 TTTACCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTC 830 Query 46423 GGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGC 46482 | || || | | || |||||||| || || ||||||||||| | || ||||| | Sbjct 831 GTTAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGG 890 Query 46483 CGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATT 46541 || | | || ||||| |||||| | ||| || | | | |||||| | || Sbjct 891 AGGGATTCCTTCTTTGTCTTGGATCTT-TGCTTTTACGTTTTCGATCGTGTCTGTGCTTT 949 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 | || |||| | || || || || || || ||||| |||||||||||||||| Sbjct 950 CGACCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTT 1003 >seq175891 Length=10111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | ||| ||||||||||| || || || || | || || | Sbjct 9217 ACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCC 9158 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| |||||||| ||||| || || ||||| | || | | ||||| Sbjct 9157 ATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 9098 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || ||| | || | | || || | || || |||| ||||| Sbjct 9097 ATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGAT 9038 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| ||||| |||||||||||||| Sbjct 9037 AGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 >seq150344 Length=698 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 |||||| || ||||| | | ||| || ||||| || ||||||||||| || ||||| || Sbjct 560 TTATTTACCACCTCTCAGTCTCAATACAAGATGTAAGGTACTCTCCTTCTGTATATTATA 619 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || || | || || |||||||| || || |||||||| | |||||||| Sbjct 620 GTCATTTAATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAAATATCAATCTTTGCTGGTC 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563878577719200