Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq188148 127 1e-24 seq175891 118 7e-22 seq5262 86.0 4e-12 seq137448 82.4 5e-11 >seq188148 Length=18106 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || ||||||||||| |||||| ||| ||||| || || || |||| ||| || || Sbjct 3625 CGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCA 3684 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| ||| | || || ||||| || ||||| | ||| | ||||||||| Sbjct 3685 TCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTG 3744 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| || | | | | ||||| | || || ||||| ||||| Sbjct 3745 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATG 3804 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| ||||||||||| |||||||||||||| Sbjct 3805 GTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq175891 Length=10111 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || || ||||||| ||| ||| |||| ||||||||||| || | || Sbjct 8737 TTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAA 8678 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||||||||||| ||||| | ||| | ||||||||||| ||||| ||||| | Sbjct 8677 GATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTT 8618 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| || || | ||| || || | ||||||||||| |||||||| ||||| || Sbjct 8617 TTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAAC 8558 Query 39708 GAAGATCTGCATG 39720 ||| || |||||| Sbjct 8557 GAAAATTTGCATG 8545 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || ||||| | |||||||||||| ||| ||||||||| ||||| ||||| | Sbjct 8545 GCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGA 8486 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || ||||||||||| || ||||||| ||||| || ||||| | ||| Sbjct 8485 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 8426 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| ||||| ||| | | | | || || | || || Sbjct 8425 GATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAAC 8366 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || || || || || ||||| ||||| Sbjct 8365 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || ||||||||| || || ||||||| | Sbjct 8316 CCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAC 8257 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| |||| | || ||||||||||| ||| ||||||| ||||| || ||||| | ||| Sbjct 8256 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 8197 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || || || ||||| || | || | | || || | ||| || Sbjct 8196 ATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACC 8137 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || ||||| || || |||||||| ||||| Sbjct 8136 TCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 >seq5262 Length=11329 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| ||||| || ||| ||||| ||||| || || | Sbjct 3152 CCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAA 3211 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| ||||| ||||| || ||||||||||||| |||||||| | || Sbjct 3212 AGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 3271 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | || || | ||| || Sbjct 3272 ATTCCCTCTTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACC 3331 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||||| ||||| || || |||||||| Sbjct 3332 TCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 >seq137448 Length=735 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || | || || | ||| ||||| || || || ||||||||||| || Sbjct 29 CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCATTT 88 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| || | || ||||| |||| || || | ||||| || | ||| Sbjct 89 AATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAGGT 148 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| || | || | | ||| || | | ||| || Sbjct 149 ATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCCTTCAACT 208 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 ||||| |||||||| || ||||| | ||||| || ||||| ||||| || Sbjct 209 TCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTTC 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346554807695180