Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq172082 228 8e-55 seq22680 120 3e-22 seq188148 118 1e-21 seq5262 113 4e-20 seq175891 105 7e-18 seq185055 98.7 1e-15 >seq172082 Length=56793 Score = 228 bits (252), Expect = 8e-55 Identities = 473/702 (67%), Gaps = 8/702 (1%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 |||||||| ||||| || |||| |||||| || ||||| | || | || | || Sbjct 14681 TCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTACG 14740 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 || || || || || | || || || || ||||| || | | |||||| || Sbjct 14741 GGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATGATTTCAATA 14800 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 | | || || || ||||| |||||||| || ||||| || |||||| || ||| Sbjct 14801 ATTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAAATCACAA 14860 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 || || ||||| || | || || | ||| ||| ||| || | ||| ||||| || || Sbjct 14861 TGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGACCA 14920 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 ||||| |||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 14921 CGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGACAGCA 14980 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || || || | | ||||| || || | || ||| | ||||| || ||| Sbjct 14981 GCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGACATGGCC 15040 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || |||||||| || || ||||| ||||| || || || || | || ||| Sbjct 15041 CAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATA----GATATTC 15096 Query 133150 TCTTCCG--AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTAC 133205 || | | || | | ||| ||||| || | | ||||||||| |||||||| Sbjct 15097 TCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTAC 15156 Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 || |||||||| ||||| || || || || || || ||||| || ||||| ||||| Sbjct 15157 ATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTTG 15216 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 | |||||| || || |||||||| || || || || ||| ||||| || || ||||| Sbjct 15217 GGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCAG 15276 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTT 133385 ||||| || ||||| || || |||||| | | | |||||||| | ||||| Sbjct 15277 AACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCCTT 15336 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||| || || || ||||| ||||||||||| || || || || Sbjct 15337 GGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTTCAGC 15378 >seq22680 Length=2395 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 |||||||||| || || ||||| || || || || || || || | || ||||| || Sbjct 1003 AAATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCA 944 Query 38302 CCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||||| | |||| ||| |||| |||||||| ||||| || | ||| Sbjct 943 CAGACACGATCGAAAACG-TAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGAC 885 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| | | || | ||| || |||||||| || || | | ||||| ||||||||| Sbjct 884 CAACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTAC 825 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| || | ||| |||| || | ||||||| || Sbjct 824 AACATCCAAAAGGAAAGCACCTTACATCTGGTACTAAGACTGAGAGGAGG 775 >seq188148 Length=18106 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || |||||||| ||| | || |||||| | || Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| |||||||| || || ||| | || ||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | || ||| | |||||||||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || | |||||||| || || Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCG 3625 >seq5262 Length=11329 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || ||||| || ||||| || |||||||| | || ||||| | | Sbjct 3379 AATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTC 3320 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| |||||| || || | ||||||||||||||||| | || || Sbjct 3319 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCA 3260 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || || |||||| |||| || | || || || |||||||| Sbjct 3259 GCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAA 3200 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| |||| |||| ||||| ||||| Sbjct 3199 TATTCAAAAGGAATCGACATTGCACTTGGTTTTGCGT 3163 >seq175891 Length=10111 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || ||||| || ||||| | || || ||| | || Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | |||||||| || ||||| || ||||| | || ||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || ||||| |||| |||| ||||| | ||| || ||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || ||||| ||||| Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTTGCGT 9673 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || |||||||||||||| | || || ||| | || Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | ||||| || ||||| ||| | || ||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| |||| |||| |||||| | || ||||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 || ||||| ||| | || |||||||||| | ||||| Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTT 8535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | ||||| ||||| || || | || || || | | Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| ||||||| |||||||| || |||||| | || || Sbjct 8606 GATACTATAGAAAACG-TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 8664 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| |||| || | || || | ||| ||||| Sbjct 8665 ACAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAA 8724 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||| | || || || || || Sbjct 8725 CATCCAAAAAGAATCTACCCTTCACTTAGT 8754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || | || ||||| || |||||| | || || ||| | | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | || | ||||||| |||||||| || |||||| | || || Sbjct 8834 GATACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 8892 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| |||| || | || || | |||||||| Sbjct 8893 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAA 8952 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||| | || || || || || Sbjct 8953 CATCCAAAAAGAATCTACCCTTCACTTAGT 8982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||| |||||| | || || ||| | | Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCT 9061 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||||| || || || || |||||| | |||||| Sbjct 9062 GATACTATAGAGAATGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAA 9121 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || || ||| |||| || | || || | || || ||| Sbjct 9122 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATAAC 9181 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| ||||| Sbjct 9182 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGT 9217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||| ||| | || || ||| | | Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | ||||| | || ||||| || ||||| | || || Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || || ||| |||| || | || || | ||| || ||| Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAAC 9409 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| ||||| Sbjct 9410 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGT 9445 >seq185055 Length=12631 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || |||||||| ||||| | || ||||| | |||| | | | ||| |||| | Sbjct 12628 ACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAGGCT 12569 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || ||||| || |||||| | || ||||| || | || | ||| |||||| Sbjct 12568 AAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGCAAA 12509 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || | || || | || || || ||||||||||||||||||||| | || || ||| Sbjct 12508 CAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTCCAT 12449 Query 38448 TTGGTGCTGCGT 38459 |||||||| ||| Sbjct 12448 TTGGTGCTACGT 12437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498969509286400