Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq173136 152 6e-32 seq172082 102 1e-16 seq31717 95.1 1e-14 seq123671 89.7 6e-13 >seq173136 Length=30018 Score = 152 bits (168), Expect = 6e-32 Identities = 457/696 (66%), Gaps = 27/696 (4%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | || || |||||||| |||||||||| ||||| || || ||||| || Sbjct 3498 ATATATGTTAGAAGTATAAGGTTCAAATGATTCATTATTGCCCAAAATCTGAGCGGTAGA 3439 Query 105994 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGT 106051 ||||| ||||| || || || | ||||| |||||| | ||| | || |||||| | Sbjct 3438 TGCTGTAGGCATGGGAGCAATAAGCAAAGA--GTTACGTACACCATGTTGCTTGATTTTT 3381 Query 106052 TCCTTGA-----GAACA-TCCCAGTCGT-AGTTGAGCTTGGTTTCACCTTCCCACATATC 106104 || || | || || ||||| || ||| || | |||| | | ||||||||| Sbjct 3380 TCTTTTAATGCCGACCAATCCCACAAGTCAGT--AGGT--GTTTTA---TTCCACATATC 3328 Query 106105 AAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGC 106164 | |||| || | |||| | ||| | || | | || ||||| | ||| | Sbjct 3327 ATATTGTAGTATTCCTTTGCTAACTGGACAGCCGGGATAGGTTTCATATGTACCATATTT 3268 Query 106165 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 106224 ||| ||||||||||| || ||||| | || | | ||| ||||||||||| || | Sbjct 3267 TTCTGCCAATTCACAACTGGCCTCTAAGGCACCATAATAAATGGTTTCAAATATTTGTTG 3208 Query 106225 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGC 106284 |||| ||| | || ||| | | | |||| ||||| || ||| || Sbjct 3207 GTTCAATAAAAAGGCCTGTTCACTCTCATAGGGGAAGCGCATTAAAATCAAAGTATCAGC 3148 Query 106285 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGT 106341 | ||| || ||||| | |||||| || | || |||| |||||| |||| | | | Sbjct 3147 AAAACCCTGGACACCTATACCAATGGGGCGATGACGCAGATTAGATTTCTTTGCCTCTGG 3088 Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 | | ||||||| ||||| |||| || | | |||| ||| |||||| || || || Sbjct 3087 C---AGGGGATAATAATTTATGTCTATAATTTTATTTAAATTCCTGGTAATAACTTTAGT 3031 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 106461 | | | | ||| | | | || || || |||| | ||| || | ||| Sbjct 3030 AACATTTTTCAATTTCTTAAAGTCGAATGTTT---TCTCAGGTGTAACAAACATATTAAG 2974 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 || || || |||||||| ||||| || | ||||| | | || |||| |||||| Sbjct 2973 CGCAATGGAGGCCAAATTACAAACGGCTATTTCATCGGGGGCAGAATATTCTACAATTTC 2914 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 |||||||| |||| | ||||| || || | ||| | ||||||||||| || || Sbjct 2913 TGTACACAGGTTGCTGCATTTAATAGTGCCTATATTTTGCTGGTTACTCTTGCGATTACA 2854 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||||||||||| | ||||||||| || || || || Sbjct 2853 GGCATCCTTGTATAACATGTAGGGTGTACCAGTTTC 2818 >seq172082 Length=56793 Score = 102 bits (112), Expect = 1e-16 Identities = 331/505 (66%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||||||||| || || || | |||||| ||||| ||||| ||||| ||||| || || Sbjct 14866 ACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTTT 14925 Query 117351 CTTCAACCAATAAATAGCGCAGAATGAC--CCGGAGAAGAAGATACCCTCCACACACGCA 117408 ||| | |||| |||| || || | || || |||||| |||||||| ||| ||| Sbjct 14926 CTTGAGCCAA--AATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGACAGCAGCA 14983 Query 117409 AACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAACCATTTCATTGCCCA 117467 || |||| || ||||| | || ||| || || | || ||| ||| ||||| Sbjct 14984 AATGCAATAATACGCTCACCAAAATTAGCC-GATTTAGATGAAATCCAAGACATGGCCCA 15042 Query 117468 TTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT-TT 117526 | ||||| || || | ||| | ||||| || || | ||||| | |||| || Sbjct 15043 ATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATA-TTCTCGTT 15101 Query 117527 CAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTT 117586 | | |||||||||||| ||||||| || | ||| ||||| || || ||| Sbjct 15102 GATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTACATTTT 15161 Query 117587 CATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGC 117644 | |||||| ||| | | ||||| | || || || ||| ||||| || | | Sbjct 15162 CC--ATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTTGGGA 15219 Query 117645 AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGAT 117704 ||| | | | ||| ||| ||| || |||||||| | |||||||||||||| | Sbjct 15220 GAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCAGAAC 15279 Query 117705 GTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGA 117764 || || || | |||||| || | || | | |||||| | ||| ||||| Sbjct 15280 GTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCCTTGGA 15339 Query 117765 CAAATCAACTTCTTCCGCAGTCCAA 117789 | ||||||||| || | |||||| Sbjct 15340 GAGATCAACTTCCTCAACGGTCCAA 15364 >seq31717 Length=19532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 285/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||| ||||| |||| ||||| || | ||||| ||||| | || || || | Sbjct 6778 CCAGTACCAATACCATCGGCACCATTTACCAATACCATGGGTATAATGGGTATATACCAC 6837 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 | |||||||| | |||||||| | ||| | ||| | || ||||| | ||| Sbjct 6838 TGAGGTTCAATCTTTTGACCATCATCGACTTCGTACTGGAGTAAAGGATCATCATGGGGA 6897 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCA 168470 | || ||| |||||| | | | |||||||| || | | || | Sbjct 6898 TGGAATATCAAACGAGCCAAGGGAGACATAATGGTGAAAATATAACGAGCGCTAGCGCAA 6957 Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530 || || |||||| | | ||| ||||| |||||||| | || || || | || ||||| Sbjct 6958 TCTTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGATGTTA 7017 Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCA 168590 || |||||| || | | || || |||||||| || || || ||||||||| Sbjct 7018 TTAGAACCCACATAATTTTGAGCTAAATTAACAATAGTCATTTGTAGAGAGACTTCACCA 7077 Query 168591 TGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCC 168650 || ||||| |||||| | || || ||| | | | || ||| || ||||| | |||| Sbjct 7078 TGATGGTAGGCAGACATTTCAGCAACAGAACCGGACAATTGAGCAACCTTGACTTCACGT 7137 Query 168651 TTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCC 168710 ||| ||| | ||| || | |||| || || | || |||||| | ||||||| Sbjct 7138 TTGTCATTACGTTTGAAACAGGTGAACATAACCTTACGTTGACCAGGCTTAAAACCATCC 7197 Query 168711 GCCATATGGGCAATAGAGCG 168730 ||||| || ||||| || Sbjct 7198 ACCATACAGGGTATAGAACG 7217 >seq123671 Length=1854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 ||| || || |||||||| ||||| || ||| |||||||| ||||| || || || Sbjct 636 TGCTAAGTTACAAACAGCTACTTCATCTTTGCTTGTATACTCTAATATTTCAGTGCATAA 695 Query 106531 GTTGGAACT--CTT--AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 ||| ||| ||| ||| ||| |||||||| || || |||||| |||||| |||| Sbjct 696 GTT---ACTTCCTTTCAATACTCCT-AAATTCTTCTGATTGTTCTTTTCGTTGCATGCAT 751 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||| ||||| || || | || || || |||||| | | |||||| ||||| Sbjct 752 CCTTGTAAAGCATATACGGATTGCCTGTTTCAATCTGTGCTTCAATAATTGCTTTCCA 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588561453690400