Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq175763 114 1e-20 >seq175763 Length=14424 Score = 114 bits (126), Expect = 1e-20 Identities = 349/524 (67%), Gaps = 24/524 (5%) Strand=Plus/Plus Query 154593 TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGT 154652 || ||||| || || || | |||| ||||| || ||||| ||| | || | |||||| Sbjct 5333 TTGTGTGAAATTACTGGATATGATAAAATATCTTTCCAACCAAACTCTGGTGCTCAGGGT 5392 Query 154653 GAGTATGCAGGACTGTTAGCAATCCAAGCA--TACCATCAAGGAT-CAGGAGATGATAAA 154709 ||||||||||| || ||| || | ||| |||||| || || | || | | | Sbjct 5393 GAGTATGCAGGTCTAAGAGCTATAC--GCAGTTACCATGAACACCGCAAG-GAAGGTCAT 5449 Query 154710 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATG 154769 | || | || || |||||| || || |||||||| ||||| || |||| ||| Sbjct 5450 CGTAACATTTGCTTAATACCAATTTCTGCTCATGGAACCAATCCCGCATCTGCTCAGATG 5509 Query 154770 GCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT----GATGGTAACATAGACATCAA 154825 || || |||||||||| | | | | || | ||||| | ||| || || Sbjct 5510 GCCGGTATGAAAGTTGAACCTAT----TCGCATACTCCCCGATGGAAGCATTGATATGGC 5565 Query 154826 AGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGT--CATGTATTATGATTACA 154883 | || | || ||| ||| ||| || | | | | | ||||| | ||||||||| Sbjct 5566 TCACTTACGCGACAAGGCA-TCA-GAACACGCTCGTAATTTATCATGTTTAATGATTACA 5623 Query 154884 TACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCG--TTC 154941 || || || ||| |||| | ||| || |||| | | | ||||| | |||| ||| Sbjct 5624 TATCCCTCGACA-ATGGGGGTTTTCGAAGAAACAGTGG-CTGATATTTGCGATCTAATTC 5681 Query 154942 AT-GACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTA 155000 || |||| ||| || || || ||||||||||| || ||| | ||||| || ||||| | Sbjct 5682 ATAGACA-TGGAGGACAAGTTTATCTTGATGGCGCCAATATGAATGCTCAAGTAGGTTTG 5740 Query 155001 GCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGT 155060 || |||| || || ||||||| ||| |||| || || ||||| |||||| Sbjct 5741 TGCCGCCCTGGTGACTACGGCAGTGATGTATCACATTTAAATTTGCACAAAACGTTCTGT 5800 Query 155061 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || ||||| |||||||| | ||||| || || || Sbjct 5801 ATTCCTCACGGTGGTGGCGGTCCTGGTATGGGTCCAATTGGCGT 5844 Score = 100 bits (110), Expect = 3e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||| || |||||| |||| | | || ||||| | || ||||| || |||||| Sbjct 4457 GATATCGCAATAGGTACCTCGCAACGCCTCGGAGTTCCTCTTGGCTATGGTGGACCTCAT 4516 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGA-GAAAGATACCTGGCAGAATTGTAGG 153865 || | || ||||| | | | |||| | || ||| ||||| ||||| |||| Sbjct 4517 GCAGGTTTTTTTGCTTGCAAACA-AAGTTTGGTTCGATTGATGCCTGGGAGAATGATAGG 4575 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 | || ||| | || || || | ||||| | |||||||||||||| | || || Sbjct 4576 TGTAACAAGAGACATGGATGGCAACGACGCATATCGCTTAGCACTACAGACCCGTGAACA 4635 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 ||||| | ||||| ||||| || |||||||| || || || || ||| | ||||||| Sbjct 4636 ACATATTCGTAGAGATAAAGCTACGAGTAACATATGTACTGCCCAAGCATTATTGGCTAA 4695 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027 |||||| | | |||||| ||||||||| | || || || Sbjct 4696 TATGTCAGCGATGTATGCAATTTATCATGGTCCTGAAGGCCT 4737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577819358806400