Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq175763 132 6e-26 >seq175763 Length=14424 Score = 132 bits (146), Expect = 6e-26 Identities = 353/524 (67%), Gaps = 24/524 (5%) Strand=Plus/Plus Query 159268 TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGT 159327 || ||||| || || || | |||| ||||| || ||||| ||| | || | |||||| Sbjct 5333 TTGTGTGAAATTACTGGATATGATAAAATATCTTTCCAACCAAACTCTGGTGCTCAGGGT 5392 Query 159328 GAGTATGCAGGACTGTTAGCAATCCAAGCA--TACCATCAAGGAT-CAGGAGATGATAAA 159384 ||||||||||| || ||| || | ||| |||||| || || | || | | | Sbjct 5393 GAGTATGCAGGTCTAAGAGCTATAC--GCAGTTACCATGAACACCGCAAG-GAAGGTCAT 5449 Query 159385 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATG 159444 | || | || || |||||| || || |||||||| ||||| ||||| || |||| Sbjct 5450 CGTAACATTTGCTTAATACCAATTTCTGCTCATGGAACCAATCCCGCATCTGCTCAGATG 5509 Query 159445 GCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT----GATGGCAACATAGACATCAA 159500 || || |||||||||| | | | | || | ||||| | ||| || || Sbjct 5510 GCCGGTATGAAAGTTGAACCTAT----TCGCATACTCCCCGATGGAAGCATTGATATGGC 5565 Query 159501 AGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGT--CATGTATTATGATTACA 159558 | || | || ||| ||| ||| || | | | | | ||||| | ||||||||| Sbjct 5566 TCACTTACGCGACAAGGCA-TCA-GAACACGCTCGTAATTTATCATGTTTAATGATTACA 5623 Query 159559 TATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG--TTC 159616 ||||| || ||| |||| | ||| || ||||| | | ||||| | ||| ||| Sbjct 5624 TATCCCTCGACA-ATGGGGGTTTTCGAAGAAACAGTGG-CTGATATTTGCGATCTAATTC 5681 Query 159617 ATGAGA-ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 || ||| |||| || || || ||||||||||| || ||| | ||||| || |||||| | Sbjct 5682 AT-AGACATGGAGGACAAGTTTATCTTGATGGCGCCAATATGAATGCTCAAGTAGGTTTG 5740 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 || ||||||| || ||||||| ||| |||| || || || || |||||| Sbjct 5741 TGCCGCCCTGGTGACTACGGCAGTGATGTATCACATTTAAATTTGCACAAAACGTTCTGT 5800 Query 159736 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || ||||| |||||||| | ||||| ||||| || Sbjct 5801 ATTCCTCACGGTGGTGGCGGTCCTGGTATGGGTCCAATTGGCGT 5844 Score = 105 bits (116), Expect = 8e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 158520 GATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATT 158579 ||| ||||| ||||| ||||| || ||| | || || || | ||||| | || Sbjct 4555 GATGCCTGGGAGAATGATAGGTGTAACAAGAGACATGGATGGCAACGACGCATATCGCTT 4614 Query 158580 AGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCAC 158639 |||||||||||| | || || ||||| | ||||| ||||| || |||||||| || || Sbjct 4615 AGCACTACAGACCCGTGAACAACATATTCGTAGAGATAAAGCTACGAGTAACATATGTAC 4674 Query 158640 AGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGG 158699 || |||||| | ||||||||||||| | | | |||||| ||||||||| | || || Sbjct 4675 TGCCCAAGCATTATTGGCTAATATGTCAGCGATGTATGCAATTTATCATGGTCCTGAAGG 4734 Query 158700 ACT 158702 || Sbjct 4735 CCT 4737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCT-TACACTCCCTATCAAGCTGAGAT 157985 ||||| || |||||||||| | ||| ||| || || || || |||||| | || || Sbjct 3850 CGAAATATTTTTGAGAATCCCGGCTGG-ACAACTCAGTATACACCTTATCAACCAGAAAT 3908 Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045 | |||| || | || ||| |||| || || || ||||| || | | ||| | ||||| Sbjct 3909 AGCTCAAGGTCGTTTAGAATCTTTGTTAAACTATCAAACACTTGTATCTGAAATGACAGG 3968 Query 158046 ACTACCGATA--GCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || |||| ||||| || || |||||||||||| ||| |||||||| ||||| ||| Sbjct 3969 GCT--CGATGTCGCAAATGCTTCGTTATTAGATGAAGGAACGGCAGCAGCTGAAGCTATG 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586636495825600