Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq172082 275 7e-69 seq179690 107 2e-18 seq151072 96.9 4e-15 seq187981 93.3 5e-14 >seq172082 Length=56793 Score = 275 bits (304), Expect = 7e-69 Identities = 480/692 (69%), Gaps = 10/692 (1%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || ||||| || || |||| |||| | || | | || |||||||| | ||||| Sbjct 14680 ATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTAC 14739 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | |||||| | ||||| | | || | ||| |||| || || || || | Sbjct 14740 GGGTAGAGCATCTGTTAAGAATTCCTGTT-CAATTTTTACCGCCTCCGAAATGATTT--- 14795 Query 37129 CAATAACTTCT-TCAGTTGGGGGATATTTTA---AATATTTAAACAATAAACATGCAAAA 37184 |||||| |||| || | ||| || || ||| |||||||| |||| |||||| Sbjct 14796 CAATAA-TTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAAA 14854 Query 37185 TCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATT 37244 |||||||||||||| ||||| | ||||||||||| || || || | || ||||| Sbjct 14855 TCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATA 14914 Query 37245 AAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCA 37304 | ||| | ||| || | ||||||||| | |||||| ||| ||||||||||| || Sbjct 14915 AGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCG 14974 Query 37305 ACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttt 37364 || || |||||||| | || ||| ||| ||| | | | | |||||||| Sbjct 14975 ACAGCAGCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTAGATGAAATCCAAGAC 15034 Query 37365 tttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAG 37424 | | |||||| ||||| |||||| | || |||||||| || || || ||| | Sbjct 15035 ATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATAT 15094 Query 37425 tttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGA 37484 | | || |||| ||| | || ||||| ||||||| | |||||||||||| ||||| Sbjct 15095 TCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGT 15154 Query 37485 ATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCG 37544 | |||||| || || || || |||||||| ||||| | ||| || | || ||| || || Sbjct 15155 ACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCT 15214 Query 37545 TTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCA 37604 | | || | | | | | |||||||||||||| ||||| ||| |||||||| || Sbjct 15215 TGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCC 15274 Query 37605 AGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCT 37664 ||||| | | |||||||| | ||||| | | | | ||| ||| ||| | |||| Sbjct 15275 AGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCC 15334 Query 37665 TTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || || | ||||||||| |||||||||||||| Sbjct 15335 TTGGAGAGATCAACTTCCTCAACGGTCCAAAA 15366 >seq179690 Length=14606 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||||||||| ||||| ||||| ||| |||||||| | ||| | || ||||| Sbjct 11426 GGTGTTTTACATACGAAATTCTGGATCTCTGACAATAAACACATTTATCTCGGCAGTGCC 11367 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 |||||||||||||| ||| |||||||||| ||||| || ||||| Sbjct 11366 AATATGGATTGGAGGTCATTAACTCAAGTCAAAGAGTTGGGTAT 11323 >seq151072 Length=631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| ||||| |||||||| | ||||| ||||| ||| | |||||| | Sbjct 161 AACAAACAAGCAAACTCACAATGCATGCCTTCGTCTCTTGATATTAGTTCATTGCTGTAA 102 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 || | ||||||||||| |||||| || | |||||| || || ||||| || ||| | Sbjct 101 GTCAGACCTGGCATTAAGTTTCTTTTCTTCAACCAAAAGATAGCAGCAAATGAACCACTA 42 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTA 37320 || || ||||||||||| ||||||||||| Sbjct 41 AAAAAGATACCTTCAACACATGCAAATGCTA 11 >seq187981 Length=38915 Score = 93.3 bits (102), Expect = 5e-14 Identities = 325/497 (65%), Gaps = 29/497 (6%) Strand=Plus/Minus Query 142384 TTTAGAAGGAGCTATTTTAAAATATCCAAATGATATGTATATACCAGGTAAAAGAAAATG 142443 ||||||||||| | |||||| |||| | | ||| ||| ||||| | || Sbjct 27064 TTTAGAAGGAGTAGTCTTAAAAGATCCTTCAGGAACTTATCAACCTGGTAAGCGTGGTTG 27005 Query 142444 GATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGCAGATTTAGT 142503 | |||| | |||| ||||| | | |||| ||||||||| | ||||||||||| Sbjct 27004 GCTAAAAGTTAAAAAAGATTATCTGTTTGGTGGTCGTATGGCAGATACGGCAGATTTAGT 26945 Query 142504 CGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTCTATATTTCT 142563 || |||||||| | |||||| ||||||| | || || || | |||||||| Sbjct 26944 TGTTTTGGGTGCTTCATATGGTTCTGGTAAAA---AGGGTGGTGTACTTAGCATATTTCT 26888 Query 142564 TATGGGTTGTTATGATGA---AGATACAAATACATGGAAAACTGTTACAAAATGTT---- 142616 ||||||||||||||| | |||| | |||||| |||||||| ||| ||| Sbjct 26887 AATGGGTTGTTATGATCATCGAGAT---CGTTTATGGAAGACTGTTACCAAA-GTTCATA 26832 Query 142617 CAGGATTCAATGATGAAACA-----TTAAAGGAATTA-CAGTCAATTGATATGATAAAAA 142670 ||||| | |||| ||||| ||| | || | || | ||| || | || || Sbjct 26831 CAGGACTAGATGACAAAACACGTCTAGAAATGCATGATCATTTAATGGAACTTATGGAA- 26773 Query 142671 TCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATAT-TAACAGTATACATTA--TC 142727 || | || | | || |||| | ||||| ||| ||||| | | ||| | Sbjct 26772 --AGAACTGATGGAAAACAAGTACCCAGCTGGTT-TTTATGTAACA--AACCTTTAATAC 26718 Query 142728 CAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCCGGATATGAAT 142787 |||||||||| | || |||||||| ||||| ||||||||| | ||| |||| Sbjct 26717 CAGATTTTATAGCAAAAGATCCAAAATTGATGCCTGTATGGGAAATAACAGGAGCAGAAT 26658 Query 142788 TTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAAAA 142847 |||||||||| || |||||| ||| ||||| || | ||||| ||| | | Sbjct 26657 TTACAAAATCTGGGGAACACACAGCATCTGGTATATCAATACGTTTTCCAAGAATAACAC 26598 Query 142848 ATATAAGAAATGATAAA 142864 | ||||| |||||||| Sbjct 26597 GTTTAAGAGATGATAAA 26581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590891833858400