Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq175891 178 1e-39 seq185055 141 7e-29 seq5262 138 9e-28 seq188148 134 1e-26 seq172035 82.4 6e-11 >seq175891 Length=10111 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| ||||| |||||||||||||||||||| || |||||||||| Sbjct 8772 CCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGAC 8713 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| ||||| || || || |||||||||||||| || ||| Sbjct 8712 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGA 8653 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| ||||| ||| || |||||| ||| || || | ||| || Sbjct 8652 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACC 8593 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | ||||| || ||||| ||||| || || || |||||| Sbjct 8592 TCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 Score = 174 bits (192), Expect = 1e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| ||||| |||||||||||||||||||| || ||||| || | | || | | | Sbjct 8989 ACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCC 8930 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 8929 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTT 8870 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || || |||| | || ||||| | || ||||| | |||| Sbjct 8869 GTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGAT 8810 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||||||| |||||||| || ||||| Sbjct 8809 AGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 159 bits (176), Expect = 3e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| ||| |||||||| |||||||||||||| || |||||||||| | ||| | | Sbjct 8305 ACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCC 8246 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| ||||| |||||||| |||||||| || ||||| || || || Sbjct 8245 GTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTT 8186 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || || | || | ||| ||||| | ||| || || | |||| Sbjct 8185 ATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGAT 8126 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || || || ||||| Sbjct 8125 GGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 Score = 159 bits (176), Expect = 3e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || ||||||||||| || ||||| || || ||||||| | ||| | | Sbjct 9673 ACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCC 9614 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| || || |||||||| |||||||| || ||||| |||||||| Sbjct 9613 GTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTT 9554 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| |||||| || ||| |||| | || || || | || ||||| | ||||| Sbjct 9553 ATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGAT 9494 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || ||||| || || || ||||| Sbjct 9493 AGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||||||||| || ||||| | || ||||||||||| ||||||||||| | Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||||||| || || ||||| |||||||| |||||||| || || Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| ||||||| |||| | ||| || || | || || Sbjct 8424 ATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACC 8365 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||||| || || || || ||||| || ||||| Sbjct 8364 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || |||||||||||||| ||||| || || ||||||| | ||| | | Sbjct 9445 ACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCC 9386 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| |||||||| || || |||||||| || ||||| || ||||| |||||||| Sbjct 9385 ATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTT 9326 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| |||| | || ||||| | || ||||| | || | Sbjct 9325 ATCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAAT 9266 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || || || || || || ||||| Sbjct 9265 GGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || |||||||||||||| ||||| || || ||||| | | || | | Sbjct 9217 ACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCC 9158 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| |||||||| || || |||||||| ||||| || || ||||| ||||| || Sbjct 9157 ATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 9098 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || ||||| |||||| | |||| ||| ||||| | || ||||| | |||| Sbjct 9097 ATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGAT 9038 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 9037 AGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 >seq185055 Length=12631 Score = 141 bits (156), Expect = 7e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| || ||||| || |||||||| ||||| || ||||| || | Sbjct 12426 CCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12485 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || ||||| || || || || |||||||| |||||||| || ||| Sbjct 12486 AGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGA 12545 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||| || || || ||| |||| | || || || | ||| ||| Sbjct 12546 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTCGACT 12605 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAA 101448 || | ||||| ||||||||||| || Sbjct 12606 TCCAAAGTGATAGTTTTGCCGGTCAA 12631 >seq5262 Length=11329 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| || || | || ||||| ||||| |||||||| || | | ||| | | Sbjct 3163 ACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACC 3222 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| || || || ||||| || ||||| || ||||| || ||||| || ||||| Sbjct 3223 ATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTT 3282 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || ||| ||| |||| | || ||||| | ||| || ||||| |||| Sbjct 3283 GTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGAT 3342 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||| ||||| |||||||||||||| Sbjct 3343 GGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 >seq188148 Length=18106 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || ||||| ||||| || ||||| |||| | || | |||| ||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || |||||||| |||||||| || || || |||||||| ||||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | ||||| || | || ||||| | || | ||||| Sbjct 3751 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 3810 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || || |||||||| Sbjct 3811 CCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq172035 Length=46076 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| |||||||| | ||||||||||| || || ||||| | | ||||| | Sbjct 18732 CATAACCATTGGGATCTCTACCATCCAAACTATACTTATCGTTAAGTAAAATGGCATATT 18791 Query 13821 TTAAAGCCACTGTAGGCGAAAT--AGACCATTCTAATAtttttttAGCCCAATATATTCT 13878 |||||| |||| | || || || ||||||||| || |||||||||||||| || | Sbjct 18792 CTAAAGC--CTGTTCGGGAGATTCAGTCCATTCTAAAATCTTTTTAGCCCAATACATGCG 18849 Query 13879 CATATATCCGTGCATTTTGCC 13899 | | | || |||||||| || Sbjct 18850 TAAAAAGCCATGCATTTTCCC 18870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395348886908220